Factsheet for Solyc07g052240.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 7
plasma membrane 6
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400074510	Potato	extracellular	97.97	98.34
VIT_12s0059g00770.t01	Wine grape	extracellular	84.53	84.84
KRH26769	Soybean	endoplasmic reticulum	80.85	81.9
GSMUA_Achr5P26550_001	Banana	cytosol	19.34	80.77
Solyc07g052230.2.1	Tomato	extracellular	79.74	80.63
KRH25361	Soybean	mitochondrion, nucleus	78.27	79.14
KRH56153	Soybean	mitochondrion, nucleus	77.9	78.77
TraesCS7B01G359700.1	Wheat	extracellular	75.69	75.83
Os06t0678800-01	Rice	extracellular	74.95	75.09
TraesCS7D01G447200.1	Wheat	extracellular	74.95	75.09
TraesCS7A01G459400.1	Wheat	extracellular	75.14	75.0
EER90222	Sorghum	extracellular	74.95	74.54
HORVU7Hr1G105620.1	Barley	extracellular	74.4	74.54
Solyc02g080700.1.1	Tomato	cytosol	13.44	73.74
Zm00001d014366_P002	Maize	extracellular	74.4	73.72
GSMUA_Achr5P26560_001	Banana	extracellular	46.22	72.33
Solyc02g080670.2.1	Tomato	nucleus	72.74	72.08
Os07t0510900-01	Rice	extracellular, peroxisome	60.96	71.34
Solyc04g082140.2.1	Tomato	extracellular	70.9	71.3
TraesCS2D01G230800.1	Wheat	extracellular	71.27	71.01
TraesCS2B01G274800.1	Wheat	vacuole	71.27	71.01
TraesCS2A01G224600.1	Wheat	extracellular	71.27	71.01
EER97278	Sorghum	extracellular, golgi	71.27	70.62
HORVU2Hr1G047260.1	Barley	extracellular, golgi, vacuole	71.45	70.42
Solyc01g111970.2.1	Tomato	extracellular	68.88	69.78
Zm00001d021599_P002	Maize	extracellular, plasma membrane, vacuole	70.17	68.28
Solyc12g094460.1.1	Tomato	extracellular	68.14	68.01
Solyc12g094470.1.1	Tomato	nucleus	65.56	65.56
Solyc02g065170.2.1	Tomato	nucleus	58.75	59.18
Solyc02g090360.2.1	Tomato	extracellular	57.83	58.36
Solyc11g008860.1.1	Tomato	extracellular	52.3	51.17
Solyc05g055710.2.1	Tomato	extracellular	42.73	51.1
Os07t0510833-00	Rice	extracellular	9.39	51.0
Solyc01g005510.2.1	Tomato	extracellular, plasma membrane, vacuole	51.75	50.45
Solyc05g055720.1.1	Tomato	nucleus	8.29	50.0
Solyc03g063150.2.1	Tomato	unclear	51.01	49.82
Solyc01g056310.2.1	Tomato	endoplasmic reticulum, extracellular, vacuole	50.64	49.64
Solyc05g055490.1.1	Tomato	extracellular	47.51	47.17
Solyc09g055930.2.1	Tomato	extracellular	49.72	46.23
Solyc04g081520.1.1	Tomato	extracellular	45.86	46.03
Solyc08g079090.2.1	Tomato	extracellular	48.99	45.16
Solyc03g083900.2.1	Tomato	extracellular	47.88	43.92
Solyc11g008030.1.1	Tomato	endoplasmic reticulum, extracellular, plasma membrane	46.41	34.43

Protein Annotations

Gene3D:2.60.40.420	MapMan:50.1.10	InterPro:Cu-oxidase	InterPro:Cu-oxidase_2	InterPro:Cu-oxidase_3	InterPro:CuRO_1_AAO-like
InterPro:Cupredoxin	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005507	GO:GO:0005575
GO:GO:0005618	GO:GO:0005623	GO:GO:0008150	GO:GO:0008152	GO:GO:0009505	GO:GO:0009506
GO:GO:0016491	GO:GO:0016722	GO:GO:0030312	GO:GO:0055114	InterPro:IPR008972	UniProt:K4CFC3
PFAM:PF00394	PFAM:PF07731	PFAM:PF07732	PANTHER:PTHR11709	PANTHER:PTHR11709:SF106	SUPFAM:SSF49503
SignalP:SignalP-noTM	EnsemblPlantsGene:Solyc07g052240.2	EnsemblPlants:Solyc07g052240.2.1	TMHMM:TMhelix	UniParc:UPI000276B652	SEG:seg

Description

No Description!

Coordinates

chr7:-:60726910..60730555

Molecular Weight (calculated)

60512.0 Da

IEP (calculated)

8.586

GRAVY (calculated)

-0.181

Length

543 amino acids

Sequence
(BLAST)

001: MRSLWWSLLV VQILFLLLLG FSNGESPYRW YNWNITYGDI YPLGVKQQGI LINGQFPGPP IDSVTNDNLI INVFNSLDEP FLLSWNGIQQ RRNSWQDGVY
101: GTNCPIPPGQ NFTYVLQVKD QIGSFFYFPS LAMHKAAGGY GGIIIRSRPL IPVPFPPPAG DYTILVGDWF KLNHTDLKAI LDGGNDLPFP DGLLVNGRGS
201: NGLTFTVDQG RTYRFRISNV GLTTAINFRI QGHKMVLVEA EGTHTLQNTY ESLDIHLGQS YSVLVTMDQP GQDYYIVAST RFTSPVLTAT SILHYSNSAG
301: GVSGPPPGGP TIEIDWSLNQ ARSIRQNLTA SGPRPNPQGS YHYGLVNTTR TIRLANSAPM INGKKRYAVN SVSFIPADTP LKLADYFKIP GVFNLGSIQD
401: YPTGGGGYLQ TSVMAADFRA YVEVVFENPE DTVQSWHIDG HIFFVVGMDG GQWSAASRLN YNLRDGISRC TIQVYPRSWT ALYMPLDNVG MWNIRSENWA
501: RQYLGQQFYL RVYSPVNSWR DEYPIPIGAL LCGRASGRKT RPL

Best Arabidopsis Sequence Match ( AT4G22010.1 )
(BLAST)

001: MRGSCKVSIV LLLVLINGVL GDNPYRFFTW KITYGDIYPL GVKQQGILIN GQFPGPHIDA ITNDNIIISV FNYLKEPFLI SWNGVQQRKN SWQDGVVGTT
101: CPIPPGKNFT YVIQVKDQIG SFYYFPSLAF HKAAGAFGAI RVWSRPRIPV PFSPPDGDFW LLAGDWYKTN HYVLRRLLEA GRNLPNPDGV LINGRGWGGN
201: TFTVQPGKTY RFRISNVGVA TSLNFRIQGH TMKLVEVEGS HTVQNIYTSL DIHLGQSYSV LVTANQAPQD YYIVISSRFT RKVLTTTSIL HYSNSRKGVS
301: GPVPNGPTLD IASSLYQART IRRNLTASGP RPNPQGSYHY GLIKPGRTII LANSAPWING KQRYAVNGAS FVAPDTPLKL ADYFKIPGVF NLGSIPTSPS
401: GGNGGYLQSS VMAANFREFI EVVFQNWENS VQSWHVSGYS FFVVGMDGGQ WTPGSRAKYN LRDAVSRSTV QVYPRAWTAI YIALDNVGMW NIRSENWARQ
501: YLGQQFYLRV YTSSTSYRDE YPPPKNALMC GRAKGRHTRP F

Arabidopsis Description

sks4At4g22010 [Source:UniProtKB/TrEMBL;Acc:O65449]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.