Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 5
- vacuole 7
- plasma membrane 6
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400075620 | Potato | extracellular | 95.03 | 95.03 |
| Solyc12g094460.1.1 | Tomato | extracellular | 78.82 | 78.68 |
| Solyc04g082140.2.1 | Tomato | extracellular | 75.14 | 75.56 |
| CDX87633 | Canola | extracellular | 73.11 | 73.38 |
| Bra015781.1-P | Field mustard | extracellular | 73.11 | 73.38 |
| CDX73238 | Canola | extracellular | 73.11 | 73.38 |
| KRH06000 | Soybean | endoplasmic reticulum | 72.56 | 72.83 |
| KRH60965 | Soybean | nucleus | 73.3 | 72.76 |
| KRH51639 | Soybean | nucleus | 72.38 | 71.85 |
| VIT_18s0001g00470.t01 | Wine grape | extracellular | 71.45 | 71.72 |
| KRH17495 | Soybean | nucleus | 72.19 | 71.66 |
| Bra008241.1-P | Field mustard | extracellular | 72.01 | 71.35 |
| CDY68834 | Canola | extracellular, vacuole | 72.01 | 71.22 |
| CDY55201 | Canola | extracellular | 71.82 | 71.04 |
| AT1G76160.1 | Thale cress | extracellular | 70.72 | 70.98 |
| CDY67479 | Canola | extracellular | 70.35 | 70.61 |
| Bra034943.1-P | Field mustard | extracellular | 70.35 | 70.48 |
| CDY35790 | Canola | extracellular | 70.35 | 70.48 |
| AT1G41830.1 | Thale cress | extracellular | 69.98 | 70.11 |
| AT1G21860.1 | Thale cress | extracellular | 67.59 | 68.22 |
| AT1G21850.1 | Thale cress | extracellular | 68.32 | 67.33 |
| Solyc01g111970.2.1 | Tomato | extracellular | 66.11 | 66.98 |
| CDY31468 | Canola | extracellular | 67.77 | 66.79 |
| Bra025818.1-P | Field mustard | extracellular | 66.85 | 65.88 |
| Solyc07g052230.2.1 | Tomato | extracellular | 65.01 | 65.74 |
| Solyc07g052240.2.1 | Tomato | nucleus | 65.56 | 65.56 |
| Solyc02g080670.2.1 | Tomato | nucleus | 64.27 | 63.69 |
| Solyc02g080700.1.1 | Tomato | cytosol | 11.42 | 62.63 |
| Solyc02g065170.2.1 | Tomato | nucleus | 56.17 | 56.59 |
| Solyc02g090360.2.1 | Tomato | extracellular | 55.62 | 56.13 |
| CDY29530 | Canola | plastid | 61.14 | 54.79 |
| Solyc05g055710.2.1 | Tomato | extracellular | 41.25 | 49.34 |
| Solyc11g008860.1.1 | Tomato | extracellular | 49.54 | 48.47 |
| Solyc01g056310.2.1 | Tomato | endoplasmic reticulum, extracellular, vacuole | 48.99 | 48.01 |
| Solyc05g055720.1.1 | Tomato | nucleus | 7.92 | 47.78 |
| Solyc01g005510.2.1 | Tomato | extracellular, plasma membrane, vacuole | 48.62 | 47.4 |
| KRH57767 | Soybean | cytosol, peroxisome | 30.94 | 46.93 |
| Solyc03g063150.2.1 | Tomato | unclear | 47.33 | 46.22 |
| Solyc04g081520.1.1 | Tomato | extracellular | 45.49 | 45.66 |
| Solyc05g055490.1.1 | Tomato | extracellular | 45.12 | 44.79 |
| Solyc09g055930.2.1 | Tomato | extracellular | 46.04 | 42.81 |
| Solyc08g079090.2.1 | Tomato | extracellular | 46.22 | 42.61 |
| Solyc03g083900.2.1 | Tomato | extracellular | 45.67 | 41.89 |
| Solyc11g008030.1.1 | Tomato | endoplasmic reticulum, extracellular, plasma membrane | 44.01 | 32.65 |
Protein Annotations
| Gene3D:2.60.40.420 | MapMan:50.1.10 | InterPro:Cu-oxidase | InterPro:Cu-oxidase_2 | InterPro:Cu-oxidase_3 | InterPro:CuRO_1_AAO-like |
| InterPro:Cupredoxin | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005507 | GO:GO:0005575 |
| GO:GO:0005618 | GO:GO:0005623 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009505 | GO:GO:0009506 |
| GO:GO:0016491 | GO:GO:0016722 | GO:GO:0030312 | GO:GO:0055114 | InterPro:IPR008972 | UniProt:K4DH19 |
| PFAM:PF00394 | PFAM:PF07731 | PFAM:PF07732 | PANTHER:PTHR11709 | PANTHER:PTHR11709:SF90 | SUPFAM:SSF49503 |
| SignalP:SignalP-noTM | EnsemblPlantsGene:Solyc12g094470.1 | EnsemblPlants:Solyc12g094470.1.1 | UniParc:UPI000276988E | SEG:seg | : |
Description
No Description!
Coordinates
chr12:+:64689589..64691934
Molecular Weight (calculated)
61102.5 Da
IEP (calculated)
8.686
GRAVY (calculated)
-0.198
Length
543 amino acids
Sequence
(BLAST)
(BLAST)
001: MLLYKLLVVF LVSFLLVNSI VAENPYRFYE WNVTYGTISP LGVPQQGILI NGQFPGPDII SVTNDNVIIN VINNLDDDFL LSWHGVQNRR NSYQDGVWGT
101: TCPIPPGKNF TYRLQMKDQI GSFYYFPTTA FHKAAGGFGS IRIFSGPFVH VPLPPYAGDF TVLIGDWYKR NHTNLKAILD RGHKLPFPDG ILINGRGPNG
201: ATYTVDQGQT YRLRISNVGL ENSLNFRIEG HNLTLVEVEG THTMQETYTS LDVHVGQSYS VLITADQAPK DYYIVVSSRF TSKVLTTTGV LHYSTSNSTV
301: SGPIPSGPTI EVGWSLYQAR SIRTNLTANG PRPNPQGAYH YGMIDTTRTI RLATSAGQVN GEQRYAVNSV SFVPTDDTPL KLADYFKIGG FYPGNIHDVP
401: IGGRIHLNTS VLQTDYRTFI EIVFENKERI VQSWHIAGYA FWVVGMDGGH WTPASRNQYN LRDAVYRSTT QVYPRSWTAI YIALDNVGIW NIRSEFWARR
501: YLGQQLYMRV YTTSTSLQDE YLIPTNAILC GKVSEFHNKT MLN
101: TCPIPPGKNF TYRLQMKDQI GSFYYFPTTA FHKAAGGFGS IRIFSGPFVH VPLPPYAGDF TVLIGDWYKR NHTNLKAILD RGHKLPFPDG ILINGRGPNG
201: ATYTVDQGQT YRLRISNVGL ENSLNFRIEG HNLTLVEVEG THTMQETYTS LDVHVGQSYS VLITADQAPK DYYIVVSSRF TSKVLTTTGV LHYSTSNSTV
301: SGPIPSGPTI EVGWSLYQAR SIRTNLTANG PRPNPQGAYH YGMIDTTRTI RLATSAGQVN GEQRYAVNSV SFVPTDDTPL KLADYFKIGG FYPGNIHDVP
401: IGGRIHLNTS VLQTDYRTFI EIVFENKERI VQSWHIAGYA FWVVGMDGGH WTPASRNQYN LRDAVYRSTT QVYPRSWTAI YIALDNVGIW NIRSEFWARR
501: YLGQQLYMRV YTTSTSLQDE YLIPTNAILC GKVSEFHNKT MLN
001: MAGSASFAAA LFIGLSLLFA VTAEDPYRFF EWNITYGDIY PLGVRQQGIL INGAFPGPDI HSVTNDNLII NVYNSLDEPF LLSWNGIQQR RNSFVDGVYG
101: TTCPIPPGKN YTYILQMKDQ IGSFYYFPSL GFHKAAGGFG GIRILSRPRI PVPFPDPAGD TTVLIGDWYK ANHTDLRAQL DNGKKLPLPD GILINGRSSG
201: ATLNVEQGKT YRFRISNVGL QDSLNFRIQD HKMKVVEVEG THTLQTTFSS LDVHVGQSYS VLVTADQTPR DYYVVVSSRF TSNVLTTTGI FRYSNSAGGV
301: SGPIPGGPTI QIDWSLNQAR AIRTNLSASG PRPNPQGSYH YGMINTTRTI RLASSAGQVD GKQRYAVNSV SFKPADTPLK IADYFKIDGV YRSGSIQYQP
401: TGGGIYLDTS VMQVDYRTFV EIIFENSEDI VQSWHLDGYS FWVVGMDGGQ WSPDSRNEYN LRDAVARCTV QVYPSSWTAI LIALDNVGMW NLRSEFWARQ
501: YLGQQLYLRV YTPSTSLRDE YPIPKNALLC GRASGRSTRP L
101: TTCPIPPGKN YTYILQMKDQ IGSFYYFPSL GFHKAAGGFG GIRILSRPRI PVPFPDPAGD TTVLIGDWYK ANHTDLRAQL DNGKKLPLPD GILINGRSSG
201: ATLNVEQGKT YRFRISNVGL QDSLNFRIQD HKMKVVEVEG THTLQTTFSS LDVHVGQSYS VLVTADQTPR DYYVVVSSRF TSNVLTTTGI FRYSNSAGGV
301: SGPIPGGPTI QIDWSLNQAR AIRTNLSASG PRPNPQGSYH YGMINTTRTI RLASSAGQVD GKQRYAVNSV SFKPADTPLK IADYFKIDGV YRSGSIQYQP
401: TGGGIYLDTS VMQVDYRTFV EIIFENSEDI VQSWHLDGYS FWVVGMDGGQ WSPDSRNEYN LRDAVARCTV QVYPSSWTAI LIALDNVGMW NLRSEFWARQ
501: YLGQQLYLRV YTPSTSLRDE YPIPKNALLC GRASGRSTRP L
Arabidopsis Description
sks5Sks5 [Source:UniProtKB/TrEMBL;Acc:A0A178WJJ9]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.