Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 5
- golgi 5
- extracellular 8
- vacuole 4
- plasma membrane 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G21860.1 | Thale cress | extracellular | 82.03 | 84.01 |
| CDY31468 | Canola | extracellular | 79.85 | 79.85 |
| Bra025818.1-P | Field mustard | extracellular | 78.22 | 78.22 |
| AT1G76160.1 | Thale cress | extracellular | 74.41 | 75.79 |
| KRH06000 | Soybean | endoplasmic reticulum | 72.6 | 73.94 |
| KRH60965 | Soybean | nucleus | 72.78 | 73.31 |
| KRH17495 | Soybean | nucleus | 72.78 | 73.31 |
| AT1G41830.1 | Thale cress | extracellular | 71.87 | 73.06 |
| VIT_18s0001g00470.t01 | Wine grape | extracellular | 71.32 | 72.64 |
| KRH51639 | Soybean | nucleus | 72.05 | 72.58 |
| Solyc04g082140.2.1 | Tomato | extracellular | 69.69 | 71.11 |
| PGSC0003DMT400025805 | Potato | extracellular | 69.69 | 71.11 |
| Solyc12g094460.1.1 | Tomato | extracellular | 68.24 | 69.12 |
| PGSC0003DMT400075398 | Potato | extracellular | 67.88 | 68.75 |
| PGSC0003DMT400075620 | Potato | extracellular | 67.7 | 68.69 |
| Solyc12g094470.1.1 | Tomato | nucleus | 67.33 | 68.32 |
| AT4G22010.1 | Thale cress | extracellular | 64.79 | 65.99 |
| AT4G38420.1 | Thale cress | extracellular | 64.43 | 64.66 |
| CDY29530 | Canola | plastid | 70.96 | 64.52 |
| AT4G28090.1 | Thale cress | extracellular | 57.53 | 57.95 |
| AT5G66920.1 | Thale cress | extracellular, plasma membrane, vacuole | 54.08 | 54.58 |
| AT3G13390.1 | Thale cress | extracellular, plasma membrane, vacuole | 52.63 | 52.35 |
| AT1G55570.1 | Thale cress | extracellular, plasma membrane | 51.72 | 51.35 |
| AT2G23630.2 | Thale cress | extracellular | 50.82 | 51.28 |
| AT1G55560.1 | Thale cress | extracellular | 51.0 | 51.18 |
| AT3G13400.1 | Thale cress | extracellular, plasma membrane | 51.0 | 51.0 |
| AT4G37160.1 | Thale cress | extracellular | 49.73 | 50.65 |
| AT1G75790.1 | Thale cress | extracellular | 46.82 | 47.34 |
| KRH57767 | Soybean | cytosol, peroxisome | 30.49 | 46.93 |
| AT4G25240.1 | Thale cress | plasma membrane | 47.55 | 44.48 |
| AT4G12420.2 | Thale cress | extracellular, plasma membrane | 47.01 | 44.12 |
| AT5G51480.1 | Thale cress | extracellular, plasma membrane | 47.19 | 43.92 |
| AT5G48450.1 | Thale cress | extracellular | 47.37 | 42.03 |
Protein Annotations
| Gene3D:2.60.40.420 | MapMan:50.1.10 | EntrezGene:838787 | UniProt:A0A178W9U5 | ProteinID:AAF16544.1 | ProteinID:AEE30162.1 |
| ArrayExpress:AT1G21850 | EnsemblPlantsGene:AT1G21850 | RefSeq:AT1G21850 | TAIR:AT1G21850 | RefSeq:AT1G21850-TAIR-G | EnsemblPlants:AT1G21850.1 |
| TAIR:AT1G21850.1 | Unigene:At.51711 | InterPro:Cu-oxidase | InterPro:Cu-oxidase_2 | InterPro:Cu-oxidase_3 | InterPro:Cupredoxin |
| EMBL:DQ446271 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005507 | GO:GO:0005575 |
| GO:GO:0005618 | GO:GO:0005623 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009505 | GO:GO:0009506 |
| GO:GO:0016491 | GO:GO:0016722 | GO:GO:0030312 | GO:GO:0055114 | InterPro:IPR008972 | RefSeq:NP_173603.1 |
| ProteinID:OAP15219.1 | PFAM:PF00394 | PFAM:PF07731 | PFAM:PF07732 | PO:PO:0001185 | PO:PO:0009009 |
| PANTHER:PTHR11709 | PANTHER:PTHR11709:SF90 | UniProt:Q9SFF2 | SUPFAM:SSF49503 | SignalP:SignalP-noTM | TMHMM:TMhelix |
| UniParc:UPI00000482A2 | Symbol:sks8 | : | : | : | : |
Description
sks8Sks8 [Source:UniProtKB/TrEMBL;Acc:A0A178W9U5]
Coordinates
chr1:-:7667803..7670530
Molecular Weight (calculated)
61379.1 Da
IEP (calculated)
9.424
GRAVY (calculated)
-0.217
Length
551 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVKSVNTTA MILGLFFLIS FVAAEDPYKF FEWHVTYGNI SPLKVAQQGI LINGKFPGPD IAAVTNDNLI INVFNHLDEP FLISWSGIRN WRNSYQDGVY
101: GTTCPIPPGK NYTYALQVKD QIGSFYYFPS LGFHKAAGGF GAIRISSRPR IPVPFPAPAG DYTVLIGDWY KTNHKDLRAQ LDNGGKLPFP DGILINGRGS
201: GATLNIEPGK TYRLRISNVG LQNSLNFRIQ NHKMKLVEVE GTHTIQTPFS SLDVHVGQSY SVLITADQPA KDYYIVVSSR FTSKILITAG VLHYSNSAGP
301: VSGPIPEAPI QLRWSFDQAR AIKTNLAASG PRPNPQGTYH YGKIKVTRTI KLASSAGNIN GKQRYAVNSA SFYPTDTPLK LADYFKIAGV YNPGSIPDQP
401: THGAIYPVTS VMQTDYKAFV EIVFENWEDI VQTWHLDGYS FFVVGMELGK WSAASRKVYN LNDAVSRCTV QVYPRSWTAI YVSLDNVGMW NLRSELWERQ
501: YLGQQFYMRV YTPSTSLRDE YLIPKNALLC GRATGHHTTT PGPLSEGSER F
101: GTTCPIPPGK NYTYALQVKD QIGSFYYFPS LGFHKAAGGF GAIRISSRPR IPVPFPAPAG DYTVLIGDWY KTNHKDLRAQ LDNGGKLPFP DGILINGRGS
201: GATLNIEPGK TYRLRISNVG LQNSLNFRIQ NHKMKLVEVE GTHTIQTPFS SLDVHVGQSY SVLITADQPA KDYYIVVSSR FTSKILITAG VLHYSNSAGP
301: VSGPIPEAPI QLRWSFDQAR AIKTNLAASG PRPNPQGTYH YGKIKVTRTI KLASSAGNIN GKQRYAVNSA SFYPTDTPLK LADYFKIAGV YNPGSIPDQP
401: THGAIYPVTS VMQTDYKAFV EIVFENWEDI VQTWHLDGYS FFVVGMELGK WSAASRKVYN LNDAVSRCTV QVYPRSWTAI YVSLDNVGMW NLRSELWERQ
501: YLGQQFYMRV YTPSTSLRDE YLIPKNALLC GRATGHHTTT PGPLSEGSER F
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.