Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 5
- golgi 5
- extracellular 7
- vacuole 5
- plasma membrane 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY35790 | Canola | extracellular | 96.31 | 96.31 |
| CDY67479 | Canola | extracellular | 96.13 | 96.3 |
| Bra034943.1-P | Field mustard | extracellular | 96.13 | 96.13 |
| AT1G76160.1 | Thale cress | extracellular | 81.18 | 81.33 |
| KRH60965 | Soybean | nucleus | 80.44 | 79.71 |
| KRH06000 | Soybean | endoplasmic reticulum | 79.52 | 79.67 |
| KRH51639 | Soybean | nucleus | 79.7 | 78.98 |
| KRH17495 | Soybean | nucleus | 78.97 | 78.25 |
| Solyc04g082140.2.1 | Tomato | extracellular | 76.94 | 77.22 |
| PGSC0003DMT400025805 | Potato | extracellular | 76.75 | 77.04 |
| VIT_18s0001g00470.t01 | Wine grape | extracellular | 76.01 | 76.16 |
| Solyc12g094460.1.1 | Tomato | extracellular | 74.17 | 73.9 |
| PGSC0003DMT400075398 | Potato | extracellular | 73.62 | 73.35 |
| AT1G21850.1 | Thale cress | extracellular | 73.06 | 71.87 |
| AT1G21860.1 | Thale cress | extracellular | 71.22 | 71.75 |
| Solyc12g094470.1.1 | Tomato | nucleus | 70.11 | 69.98 |
| PGSC0003DMT400075620 | Potato | extracellular | 69.74 | 69.61 |
| AT4G22010.1 | Thale cress | extracellular | 66.79 | 66.91 |
| AT4G38420.1 | Thale cress | extracellular | 65.31 | 64.48 |
| AT4G28090.1 | Thale cress | extracellular | 58.67 | 58.14 |
| AT5G66920.1 | Thale cress | extracellular, plasma membrane, vacuole | 55.72 | 55.31 |
| AT3G13390.1 | Thale cress | extracellular, plasma membrane, vacuole | 55.72 | 54.51 |
| AT3G13400.1 | Thale cress | extracellular, plasma membrane | 54.24 | 53.36 |
| AT1G55570.1 | Thale cress | extracellular, plasma membrane | 54.61 | 53.33 |
| AT2G23630.2 | Thale cress | extracellular | 52.58 | 52.2 |
| AT4G37160.1 | Thale cress | extracellular | 52.03 | 52.13 |
| AT1G55560.1 | Thale cress | extracellular | 52.77 | 52.09 |
| KRH57767 | Soybean | cytosol, peroxisome | 32.29 | 48.88 |
| AT1G75790.1 | Thale cress | extracellular | 47.23 | 46.97 |
| AT4G12420.2 | Thale cress | extracellular, plasma membrane | 48.34 | 44.63 |
| AT4G25240.1 | Thale cress | plasma membrane | 47.23 | 43.46 |
| AT5G51480.1 | Thale cress | extracellular, plasma membrane | 47.05 | 43.07 |
| AT5G48450.1 | Thale cress | extracellular | 49.26 | 43.0 |
Protein Annotations
| Gene3D:2.60.40.420 | MapMan:50.1.10 | EntrezGene:840792 | UniProt:A0A178W7S3 | ProteinID:AEE31910.1 | ArrayExpress:AT1G41830 |
| EnsemblPlantsGene:AT1G41830 | RefSeq:AT1G41830 | TAIR:AT1G41830 | RefSeq:AT1G41830-TAIR-G | EnsemblPlants:AT1G41830.1 | TAIR:AT1G41830.1 |
| Unigene:At.23781 | InterPro:Cu-oxidase | InterPro:Cu-oxidase_2 | InterPro:Cu-oxidase_3 | InterPro:CuRO_1_AAO-like | InterPro:Cupredoxin |
| UniProt:F4I7X1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005507 | GO:GO:0005575 |
| GO:GO:0005576 | GO:GO:0005618 | GO:GO:0005623 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009505 |
| GO:GO:0009506 | GO:GO:0016020 | GO:GO:0016491 | GO:GO:0016722 | GO:GO:0030312 | GO:GO:0048046 |
| GO:GO:0055114 | InterPro:IPR008972 | RefSeq:NP_564479.1 | ProteinID:OAP14499.1 | PFAM:PF00394 | PFAM:PF07731 |
| PFAM:PF07732 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0005417 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR11709 | PANTHER:PTHR11709:SF90 | Symbol:SKS6 | SUPFAM:SSF49503 |
| SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI0000163007 | : | : | : |
Description
SKS6SKS6 [Source:UniProtKB/TrEMBL;Acc:A0A178W7S3]
Coordinates
chr1:-:15603568..15607966
Molecular Weight (calculated)
60581.0 Da
IEP (calculated)
9.711
GRAVY (calculated)
-0.254
Length
542 amino acids
Sequence
(BLAST)
(BLAST)
001: MMAVGRSGGT ILLFCLSFFA AVTAESPYRF FDWNVTYGDI YPLGVRQQGI LINGQFPGPD IHSVTNDNLI INVHNSLDEP FLISWNGVQN RRNSYVDGMY
101: GTTCPIPPRS NYTYILQVKD QIGSFYYFPS LAFHKAAGGF GGIRILSRPG IPVPFADPAG DYTVLIGDWY KFNHTDLKSR LDRGRKLPSP DGILINGRSN
201: GATLNVEQGK TYRLRISNVG LQDSLNFRIQ NHRMKLVEVE GTHTLQTMFS SLDVHVGQSY SVLITADQSP RDYYVVVSSR FTDKIITTTG VLRYSGSSTP
301: ASGPIPGGPT IQVDWSLNQA RAIRTNLTAS GPRPNPQGSY HYGLIPLIRT IVFGSSAGQI NGKQRYGVNS VSFVPADTPL KLADFFKISG VYKINSISDK
401: PTYGGLYLDT SVLQVDYRTF IEIVFENQED IVQSYHLNGY SFWVVGMDGG QWKTGSRNGY NLRDAVSRST VQVYPKSWTA IYIALDNVGM WNLRSEFWAR
501: QYLGQQLYLR VFTSSTSLRD EYPIPKNSRL CGRARGRHTR PL
101: GTTCPIPPRS NYTYILQVKD QIGSFYYFPS LAFHKAAGGF GGIRILSRPG IPVPFADPAG DYTVLIGDWY KFNHTDLKSR LDRGRKLPSP DGILINGRSN
201: GATLNVEQGK TYRLRISNVG LQDSLNFRIQ NHRMKLVEVE GTHTLQTMFS SLDVHVGQSY SVLITADQSP RDYYVVVSSR FTDKIITTTG VLRYSGSSTP
301: ASGPIPGGPT IQVDWSLNQA RAIRTNLTAS GPRPNPQGSY HYGLIPLIRT IVFGSSAGQI NGKQRYGVNS VSFVPADTPL KLADFFKISG VYKINSISDK
401: PTYGGLYLDT SVLQVDYRTF IEIVFENQED IVQSYHLNGY SFWVVGMDGG QWKTGSRNGY NLRDAVSRST VQVYPKSWTA IYIALDNVGM WNLRSEFWAR
501: QYLGQQLYLR VFTSSTSLRD EYPIPKNSRL CGRARGRHTR PL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.