Factsheet for PGSC0003DMT400025805

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 6
plasma membrane 6
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

extracellular: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g082140.2.1	Tomato	extracellular	97.96	97.96
KRH60965	Soybean	nucleus	81.11	80.07
KRH51639	Soybean	nucleus	80.56	79.52
Bra015781.1-P	Field mustard	extracellular	79.44	79.3
CDX73238	Canola	extracellular	79.44	79.3
KRH06000	Soybean	endoplasmic reticulum	79.26	79.11
CDX87633	Canola	extracellular	79.26	79.11
KRH17495	Soybean	nucleus	79.63	78.61
VIT_18s0001g00470.t01	Wine grape	extracellular	78.7	78.56
Bra008241.1-P	Field mustard	extracellular	79.44	78.28
AT1G76160.1	Thale cress	extracellular	78.33	78.19
CDY55201	Canola	extracellular	79.44	78.14
CDY68834	Canola	extracellular, vacuole	79.44	78.14
PGSC0003DMT400075398	Potato	extracellular	78.15	77.57
AT1G41830.1	Thale cress	extracellular	77.04	76.75
Bra034943.1-P	Field mustard	extracellular	76.67	76.38
CDY35790	Canola	extracellular	76.67	76.38
CDY67479	Canola	extracellular	76.48	76.34
PGSC0003DMT400075620	Potato	extracellular	75.93	75.51
PGSC0003DMT400048000	Potato	extracellular	72.04	74.52
PGSC0003DMT400074510	Potato	extracellular	70.93	70.79
AT1G21860.1	Thale cress	extracellular	70.19	70.45
AT1G21850.1	Thale cress	extracellular	71.11	69.69
PGSC0003DMT400074506	Potato	cytosol, extracellular, nucleus	61.48	69.17
CDY31468	Canola	extracellular	69.63	68.24
Bra025818.1-P	Field mustard	extracellular	68.89	67.51
PGSC0003DMT400042483	Potato	extracellular	67.96	67.09
PGSC0003DMT400002004	Potato	extracellular	58.52	58.63
CDY29530	Canola	plastid	62.59	55.78
PGSC0003DMT400025973	Potato	extracellular	56.48	53.6
PGSC0003DMT400016672	Potato	endoplasmic reticulum	52.59	51.26
PGSC0003DMT400060352	Potato	extracellular	52.22	51.09
PGSC0003DMT400041845	Potato	extracellular, plasma membrane, vacuole	51.85	50.18
PGSC0003DMT400010905	Potato	extracellular, plasma membrane	52.41	49.91
PGSC0003DMT400082031	Potato	extracellular, plasma membrane, vacuole	51.3	49.73
PGSC0003DMT400002554	Potato	endoplasmic reticulum, extracellular, golgi	50.74	49.28
KRH57767	Soybean	cytosol, peroxisome	31.48	47.49
PGSC0003DMT400025541	Potato	extracellular	38.33	47.05
PGSC0003DMT400074313	Potato	extracellular	50.0	46.31
PGSC0003DMT400035984	Potato	plasma membrane	47.22	43.0
PGSC0003DMT400012216	Potato	extracellular, plasma membrane, vacuole	47.59	42.98

Protein Annotations

EntrezGene:102588101	Gene3D:2.60.40.420	MapMan:50.1.10	InterPro:Cu-oxidase	InterPro:Cu-oxidase_2	InterPro:Cu-oxidase_3
InterPro:CuRO_1_AAO-like	InterPro:Cupredoxin	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005507
GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	InterPro:IPR008972	UniProt:M1AM36
PFAM:PF00394	PFAM:PF07731	PFAM:PF07732	EnsemblPlantsGene:PGSC0003DMG400009965	PGSC:PGSC0003DMG400009965	EnsemblPlants:PGSC0003DMT400025805
PANTHER:PTHR11709	PANTHER:PTHR11709:SF90	SUPFAM:SSF49503	SignalP:SignalP-noTM	UniParc:UPI000295967F	RefSeq:XP_006342102.1
SEG:seg	:	:	:	:	:

Description

Pectinesterase [Source:PGSC_GENE;Acc:PGSC0003DMG400009965]

Coordinates

chr4:-:71383129..71388098

Molecular Weight (calculated)

60100.3 Da

IEP (calculated)

8.958

GRAVY (calculated)

-0.255

Length

540 amino acids

Sequence
(BLAST)

001: MLPLKFAIAV FLVVLIGNSI VAEDPYRYFD WNVTYGTIYP LGVPQQGILI NGQFPGPDIN SVTNDNLVIN IHNSLDEPFL LSWNGVQNRR NSFVDGVYGT
101: TCPIPPGRNN TFNLQVKDQI GSFYYFPSLA FHKAAGGFGG IRILSRPRIP VPFPDPANDY TILIGDWYKK NHTDLKTILD GGRKLPFPDG ILINGRGPNG
201: VTFTVDQGKT YRLRISNVGL QNSLNFRVEG HKMTLVEVEG THTLQTTYSS LDVHVGQSYS VLITANQEAK DHYIVVSSRF TTPVLTTTAV LHYSSSNTPV
301: SGPPPGGPTI QIDWSLNQAR SIRTNLSASG PRPNPQGSYH YGMINTTKTI RLASSAGQVN GKQRYAVNSV SFVPLDTPLK LLDYFKIGGF RVGSIQDSPT
401: GGGIYQDTSV LGVDYRQFVE IIFENNEDIV QSWHLDGYSF WVVGMDGGQW TQASRDGYNL RDAVSRCTAQ VYPKSWTAIY IALDNVGMWN LRTEFWARQY
501: LGQQLYVRVY TDSTSLRDEY PIPRGARLCG KVADRHTRPL

Best Arabidopsis Sequence Match ( AT1G76160.1 )
(BLAST)

001: MAGSASFAAA LFIGLSLLFA VTAEDPYRFF EWNITYGDIY PLGVRQQGIL INGAFPGPDI HSVTNDNLII NVYNSLDEPF LLSWNGIQQR RNSFVDGVYG
101: TTCPIPPGKN YTYILQMKDQ IGSFYYFPSL GFHKAAGGFG GIRILSRPRI PVPFPDPAGD TTVLIGDWYK ANHTDLRAQL DNGKKLPLPD GILINGRSSG
201: ATLNVEQGKT YRFRISNVGL QDSLNFRIQD HKMKVVEVEG THTLQTTFSS LDVHVGQSYS VLVTADQTPR DYYVVVSSRF TSNVLTTTGI FRYSNSAGGV
301: SGPIPGGPTI QIDWSLNQAR AIRTNLSASG PRPNPQGSYH YGMINTTRTI RLASSAGQVD GKQRYAVNSV SFKPADTPLK IADYFKIDGV YRSGSIQYQP
401: TGGGIYLDTS VMQVDYRTFV EIIFENSEDI VQSWHLDGYS FWVVGMDGGQ WSPDSRNEYN LRDAVARCTV QVYPSSWTAI LIALDNVGMW NLRSEFWARQ
501: YLGQQLYLRV YTPSTSLRDE YPIPKNALLC GRASGRSTRP L

Arabidopsis Description

sks5Sks5 [Source:UniProtKB/TrEMBL;Acc:A0A178WJJ9]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.