Factsheet for PGSC0003DMT400048000

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 1
vacuole 1
cytosol 2
plasma membrane 1
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

extracellular: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g111970.2.1	Tomato	extracellular	93.87	91.42
VIT_03s0038g03570.t01	Wine grape	extracellular	80.27	77.31
KRH29100	Soybean	nucleus	76.05	72.58
KRH24127	Soybean	nucleus	75.48	72.43
PGSC0003DMT400025805	Potato	extracellular	74.52	72.04
GSMUA_Achr5P11580_001	Banana	extracellular	73.37	71.06
PGSC0003DMT400075398	Potato	extracellular	71.84	68.93
PGSC0003DMT400074506	Potato	cytosol, extracellular, nucleus	63.03	68.54
PGSC0003DMT400074510	Potato	extracellular	70.69	68.21
AT4G38420.1	Thale cress	extracellular	70.31	66.85
PGSC0003DMT400075620	Potato	extracellular	68.58	65.93
PGSC0003DMT400042483	Potato	extracellular	67.24	64.17
AT4G28090.1	Thale cress	extracellular	63.98	61.06
Bra022513.1-P	Field mustard	extracellular	63.98	60.84
CDY64276	Canola	cytosol	71.26	60.59
CDX91548	Canola	cytosol	57.47	60.36
Bra033564.1-P	Field mustard	extracellular, mitochondrion, nucleus, plastid	72.03	58.84
CDY54804	Canola	extracellular, mitochondrion, nucleus, plastid	72.03	58.84
PGSC0003DMT400002004	Potato	extracellular	60.54	58.63
CDY16369	Canola	mitochondrion	49.81	54.85
PGSC0003DMT400025973	Potato	extracellular	58.62	53.78
PGSC0003DMT400060352	Potato	extracellular	54.41	51.45
PGSC0003DMT400016672	Potato	endoplasmic reticulum	54.02	50.9
PGSC0003DMT400041845	Potato	extracellular, plasma membrane, vacuole	54.02	50.54
PGSC0003DMT400082031	Potato	extracellular, plasma membrane, vacuole	53.83	50.45
PGSC0003DMT400002554	Potato	endoplasmic reticulum, extracellular, golgi	53.45	50.18
PGSC0003DMT400010905	Potato	extracellular, plasma membrane	54.02	49.74
PGSC0003DMT400025541	Potato	extracellular	41.0	48.64
PGSC0003DMT400074313	Potato	extracellular	53.07	47.51
PGSC0003DMT400035984	Potato	plasma membrane	49.23	43.34
PGSC0003DMT400012216	Potato	extracellular, plasma membrane, vacuole	48.85	42.64

Protein Annotations

Gene3D:2.60.40.420	MapMan:50.1.10	InterPro:Cu-oxidase	InterPro:Cu-oxidase_2	InterPro:Cu-oxidase_3	InterPro:CuRO_3_AO-like
InterPro:Cupredoxin	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005507	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	InterPro:IPR008972	UniProt:M1BLS0	PFAM:PF00394
PFAM:PF07731	PFAM:PF07732	EnsemblPlantsGene:PGSC0003DMG400018650	PGSC:PGSC0003DMG400018650	EnsemblPlants:PGSC0003DMT400048000	PANTHER:PTHR11709
PANTHER:PTHR11709:SF64	SUPFAM:SSF49503	UniParc:UPI0002952897	:	:	:

Description

Multicopper oxidase [Source:PGSC_GENE;Acc:PGSC0003DMG400018650]

Coordinates

chr1:+:87970174..87974234

Molecular Weight (calculated)

58841.0 Da

IEP (calculated)

9.418

GRAVY (calculated)

-0.324

Length

522 amino acids

Sequence
(BLAST)

001: MELEGVVVAE DPYRYFDWRI TYGDIYPLGI RQQGILINGQ FPGPDIHSVT NDNLIINVHN DLHDPFLLTW NGLQQRKNSF EDGVYGTTCP IPPGQNFTYI
101: MQVKDQIGSF FYFPSLQFHK AAGGFGGIRI LSRPRIPVPF PEPAGDFTIL IGDWYKTDHK VLQTILDRGK RLTFPDGIQI NGLGRDGAKF TVEPGKTYRL
201: RISNVGLQNS LNFRIQGHKM TLVEVEGTHT IQTTLSSLDV HVGQSYSVLV TADQPAQDYY IAVSSRFTTQ ILNSTAILHY SNSRKTVSGL PPPGPTTDIS
301: WSLNQARSIR TNLTASGPRP NPQGSYHYGQ INVTRTIRLA NHAGLVDKKQ RYAVNGVSFI PADTPLKLAD YYNIDGVFKV GSIQDKPAGR KIHLDTAVMG
401: ADYRAFVEIV FENRENIVQS WHLDGYSFFV VGMDVGRWSP ASKNQYNLID AVSRCTTQVY PRSWTAIYVP LDNVGMWNLR SQFWARQYLG QQFYLRVYTP
501: VKSFRDEYPI PKNALHCGRA KG

Best Arabidopsis Sequence Match ( AT1G76160.1 )
(BLAST)

001: MAGSASFAAA LFIGLSLLFA VTAEDPYRFF EWNITYGDIY PLGVRQQGIL INGAFPGPDI HSVTNDNLII NVYNSLDEPF LLSWNGIQQR RNSFVDGVYG
101: TTCPIPPGKN YTYILQMKDQ IGSFYYFPSL GFHKAAGGFG GIRILSRPRI PVPFPDPAGD TTVLIGDWYK ANHTDLRAQL DNGKKLPLPD GILINGRSSG
201: ATLNVEQGKT YRFRISNVGL QDSLNFRIQD HKMKVVEVEG THTLQTTFSS LDVHVGQSYS VLVTADQTPR DYYVVVSSRF TSNVLTTTGI FRYSNSAGGV
301: SGPIPGGPTI QIDWSLNQAR AIRTNLSASG PRPNPQGSYH YGMINTTRTI RLASSAGQVD GKQRYAVNSV SFKPADTPLK IADYFKIDGV YRSGSIQYQP
401: TGGGIYLDTS VMQVDYRTFV EIIFENSEDI VQSWHLDGYS FWVVGMDGGQ WSPDSRNEYN LRDAVARCTV QVYPSSWTAI LIALDNVGMW NLRSEFWARQ
501: YLGQQLYLRV YTPSTSLRDE YPIPKNALLC GRASGRSTRP L

Arabidopsis Description

sks5Sks5 [Source:UniProtKB/TrEMBL;Acc:A0A178WJJ9]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.