Skip to main content
crop-pal logo
Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • extracellular 7
  • endoplasmic reticulum 5
  • vacuole 7
  • plasma membrane 6
  • golgi 5
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:secretory
BaCelLo:secretory
EpiLoc:vacuole
iPSORT:secretory
MultiLoc:extracellular
Plant-mPloc:plasma membrane
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:vacuole
YLoc:extracellular
nucleus: 21132161
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH29100 Soybean nucleus 95.96 95.43
VIT_03s0038g03570.t01 Wine grape extracellular 80.15 80.44
PGSC0003DMT400048000 Potato extracellular 72.43 75.48
KRH06000 Soybean endoplasmic reticulum 73.9 74.31
Solyc01g111970.2.1 Tomato extracellular 72.98 74.07
KRH17495 Soybean nucleus 74.45 74.04
KRH51639 Soybean nucleus 74.26 73.86
KRH60965 Soybean nucleus 74.08 73.67
GSMUA_Achr5P11580_001 Banana extracellular 71.32 71.99
KRH26769 Soybean endoplasmic reticulum 69.85 70.9
KRH56153 Soybean mitochondrion, nucleus 68.38 69.27
AT4G38420.1 Thale cress extracellular 69.67 69.03
KRH25361 Soybean mitochondrion, nucleus 68.01 68.9
KRH51114 Soybean endoplasmic reticulum 68.93 68.56
KRH02049 Soybean nucleus 68.93 68.31
KRH11453 Soybean extracellular 54.04 64.47
Bra022513.1-P Field mustard extracellular 63.6 63.02
CDX91548 Canola cytosol 56.62 61.97
CDY64276 Canola cytosol 69.85 61.89
AT4G28090.1 Thale cress extracellular 62.13 61.79
Bra033564.1-P Field mustard extracellular, mitochondrion, nucleus, plastid 70.4 59.94
CDY54804 Canola extracellular, mitochondrion, nucleus, plastid 70.4 59.94
KRH76937 Soybean endoplasmic reticulum 58.09 58.52
KRH28523 Soybean extracellular 57.54 58.29
KRH57764 Soybean cytosol, extracellular, plastid 45.4 58.12
KRH04707 Soybean endoplasmic reticulum 56.8 57.12
CDY16369 Canola mitochondrion 48.53 55.7
KRH04708 Soybean endoplasmic reticulum 55.33 55.33
KRH57766 Soybean extracellular 18.57 53.72
KRH31599 Soybean extracellular 53.86 53.08
KRH50514 Soybean endoplasmic reticulum, extracellular, vacuole 52.76 51.99
KRH57767 Soybean cytosol, peroxisome 34.01 51.68
KRH50513 Soybean vacuole 51.29 50.73
KRG89471 Soybean mitochondrion 51.65 50.45
KRH38383 Soybean cytosol, extracellular, peroxisome 44.67 46.46
KRG99235 Soybean mitochondrion 10.66 46.4
KRH18028 Soybean cytosol 26.65 46.03
KRH56354 Soybean extracellular 48.71 44.84
KRH62611 Soybean nucleus 48.71 44.76
KRH04081 Soybean extracellular 47.43 43.58
KRH46577 Soybean mitochondrion 50.74 43.33
KRH57349 Soybean endoplasmic reticulum 47.24 43.05
KRG92132 Soybean extracellular 47.24 42.98
KRG93978 Soybean extracellular 24.08 41.99
KRH34656 Soybean extracellular 45.4 41.17
KRG92134 Soybean cytosol, endoplasmic reticulum, extracellular 44.12 39.8
Protein Annotations
EntrezGene:100793934Gene3D:2.60.40.420MapMan:50.1.10EMBL:ACUP02007171InterPro:Cu-oxidaseInterPro:Cu-oxidase_2
InterPro:Cu-oxidase_3InterPro:CuRO_1_AAO-likeInterPro:CuRO_3_AO-likeInterPro:CupredoxinEnsemblPlantsGene:GLYMA_12G023300GO:GO:0003674
GO:GO:0003824GO:GO:0005488GO:GO:0005507GO:GO:0005575GO:GO:0005618GO:GO:0005623
GO:GO:0008150GO:GO:0008152GO:GO:0009505GO:GO:0009506GO:GO:0016491GO:GO:0016722
GO:GO:0030312GO:GO:0055114UniProt:I1LPF6InterPro:IPR008972EnsemblPlants:KRH24127ProteinID:KRH24127
ProteinID:KRH24127.1PFAM:PF00394PFAM:PF07731PFAM:PF07732PANTHER:PTHR11709PANTHER:PTHR11709:SF90
SUPFAM:SSF49503SignalP:SignalP-noTMUniParc:UPI00023CC74ASEG:seg::
Description
hypothetical protein
Coordinates
chr12:+:1711347..1715917
Molecular Weight (calculated)
61054.9 Da
IEP (calculated)
9.744
GRAVY (calculated)
-0.185
Length
544 amino acids
Sequence
(BLAST)
001: MKLINKPSQL RALFCSILLL LEFAFVAAED PYRFFDWTIT YGDIYPLGVK QQGILINGQF PGPEIYSVTN DNLIINVHNN LTEPFLLSWN GVQQRRNSYQ
101: DGVYGTTCPI PPGKNFTYTL QVKDQIGSFF YFPSLAFHKA AGGFGAIKIL SRPRIPVPFP DPAGDFSLLI GDWYQINHKK LQSVLDFGHK LPFPQAVLIN
201: GRPSGTTFTA IQGKTYRLRI SNVGLQNTLN FRIQGHDMKL VEVEGTHTIQ TTYSSLDVHV GQSYSVLITA DQAPKDYYIV VSTRFTNKIL TSTAILHYSN
301: SLQSVSGPIP GGPTTQIDWS IKQARSIRTN LTASGPRPNP QGSYHYGLIN ISRTITLVSS AAQVNGKQRY AVNSISFRPV DTPLKLADYF NIGRVFQVGS
401: IPDSPSGRPM YLDTSVMGAD FRAFVEIVFQ NHENIIQSWH IDGYSFWVVG MDGGVWTPNS RNQYNLRDAV SRSTTQVYPK SWTAIYMALD NVGMWNVRSE
501: FWARQYLGQQ FYLRVYSPVG SIRDEYPIPK NAILCGKVAG RTTR
Best Arabidopsis Sequence Match ( AT4G38420.1 )
(BLAST)
001: MCWWLNGAVW TMMMMTISII SFVQADDPYR FFDWRVTYGN ISPLGIPQRG ILINGQYPGP DIYSVTNDNL IINVHNDLDE PFLLSWNGVQ LRKNSYQDGV
101: YGTTCPIPPG KNYTYAIQVK DQIGSFFYFP SLAVHKAAGG FGGFRILSRP RIPVPFPEPA GDFTFLIGDW FKHDHKVLKA ILDRGHKLPL PQGVLINGQG
201: VSYMSSITVH KGKTYRFRIS NVGLQHTLNF RIQGHQMKLV EVEGTHTVQS MYTSLDIHVG QSYSVLVTMD QPDQDYDIVV STKFVAKKLL VSSTIHYSNS
301: RHSHSSSANS VHVQQPADEL DWSIKQARSI RTNLTASGPR PNPQGSYHYG RIKISRTLIL ESSAALVKRK QRYAINGVSF VPGDTPLKLA DYFKIKGVFK
401: MGSIPDKPRR GRGMRMETSV MGAHHRDFLE IIFQNREKIV QSYHLDGYSF WVVGTDRGTW SKASRREYNL RDAISRSTTQ VYPESWTAVY VALDNVGMWN
501: LRSEYWARQY LGQQFYLRVY SPTHSLRDEY LLPKNALLCG RASNKHTTP
Arabidopsis Description
sks9Putative pectinesterase [Source:UniProtKB/TrEMBL;Acc:Q8VYB3]
SUBAcon: [extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.