CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 7
plasma membrane 6
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

nucleus: 21132161
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
mitochondrion: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH04081	Soybean	extracellular	96.48	97.3
VIT_02s0154g00080.t01	Wine grape	extracellular	80.07	80.88
Bra018479.1-P	Field mustard	plasma membrane	77.39	78.84
CDX97339	Canola	plasma membrane	77.39	78.84
Solyc08g079090.2.1	Tomato	extracellular	77.72	78.78
CDY04429	Canola	plasma membrane	77.22	78.67
Bra000773.1-P	Field mustard	extracellular	76.72	78.29
CDX90830	Canola	extracellular	76.72	78.29
AT4G12420.2	Thale cress	extracellular, plasma membrane	76.55	77.85
PGSC0003DMT400012216	Potato	extracellular, plasma membrane, vacuole	77.89	77.76
KRH56354	Soybean	extracellular	67.67	68.36
KRH62611	Soybean	nucleus	67.17	67.74
KRG99235	Soybean	mitochondrion	12.9	61.6
KRH46577	Soybean	mitochondrion	64.15	60.13
KRH06000	Soybean	endoplasmic reticulum	46.4	51.2
KRH57764	Soybean	cytosol, extracellular, plastid	36.01	50.59
KRH04708	Soybean	endoplasmic reticulum	45.9	50.37
KRH60965	Soybean	nucleus	46.06	50.27
KRH17495	Soybean	nucleus	46.06	50.27
KRH51639	Soybean	nucleus	45.9	50.09
KRH26769	Soybean	endoplasmic reticulum	44.72	49.81
KRH25361	Soybean	mitochondrion, nucleus	44.72	49.72
KRH56153	Soybean	mitochondrion, nucleus	44.72	49.72
KRH57766	Soybean	extracellular	15.58	49.47
KRH76937	Soybean	endoplasmic reticulum	44.05	48.7
KRH28523	Soybean	extracellular	43.55	48.42
KRH04707	Soybean	endoplasmic reticulum	43.72	48.24
KRH29100	Soybean	nucleus	43.72	47.71
KRH51114	Soybean	endoplasmic reticulum	43.38	47.35
KRH24127	Soybean	nucleus	43.05	47.24
KRH38383	Soybean	cytosol, extracellular, peroxisome	41.21	47.04
KRH02049	Soybean	nucleus	43.05	46.81
KRH50514	Soybean	endoplasmic reticulum, extracellular, vacuole	42.71	46.2
KRH31599	Soybean	extracellular	41.88	45.29
KRH50513	Soybean	vacuole	41.71	45.27
KRG89471	Soybean	mitochondrion	41.88	44.88
KRH18028	Soybean	cytosol	23.45	44.44
KRH57767	Soybean	cytosol, peroxisome	26.47	44.13
KRG92132	Soybean	extracellular	43.89	43.81
KRH34656	Soybean	extracellular	42.38	42.17
KRG93978	Soybean	extracellular	21.94	41.99
KRH11453	Soybean	extracellular	31.32	41.01
KRG92134	Soybean	cytosol, endoplasmic reticulum, extracellular	40.7	40.3

Protein Annotations

EntrezGene:100788318	Gene3D:2.60.40.420	MapMan:50.1.10	EMBL:ACUP02002827	InterPro:Cu-oxidase	InterPro:Cu-oxidase_2
InterPro:Cu-oxidase_3	InterPro:Cupredoxin	EnsemblPlantsGene:GLYMA_05G056100	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005507	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0008150	GO:GO:0008152
GO:GO:0016020	GO:GO:0016491	GO:GO:0016722	GO:GO:0046658	GO:GO:0055114	UniProt:I1K0L3
InterPro:IPR008972	EnsemblPlants:KRH57349	ProteinID:KRH57349	ProteinID:KRH57349.1	PFAM:PF00394	PFAM:PF07731
PFAM:PF07732	PANTHER:PTHR11709	PANTHER:PTHR11709:SF82	SUPFAM:SSF49503	SignalP:SignalP-noTM	TMHMM:TMhelix
UniParc:UPI000233986F	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:-:5123859..5128473

Molecular Weight (calculated)

67149.5 Da

IEP (calculated)

9.385

GRAVY (calculated)

-0.298

Length

597 amino acids

Sequence
(BLAST)

001: MSSSSSSRAF FFFFFFLINV SLLLTLSSAA DPFVSYEFEV SYITASPLGV PQQVIAINNK FPGPTINVTT NNNVAVNVRN KLDESLLIHW SGIQQRRTSW
101: QDGVLGTNCP IPAKWNWTYQ FQVKDQIGSF FYFPSLHLQR AAGGFGGFII NNRPIIPIPF DTPHGDIVVF IGDWYTRNHT DLRKALDDGK DLGMPDGVLI
201: NGKGPYRYND TLVPDGIDYE TIEVHPGKTY RLRVHNVGVS TSLNFRIQSH NLLLAETEGS YTVQQNYTSL DIHVGQSYSF LLSTDQNAST DYYIVASARF
301: VNESRWQRVT GVAILRYTNS KGKARGPLPP GPDDQFDKTY SMNQARSIRW NVSASGARPN PQGSFRYGSI NVTDIYVLKN KPLEKINGKQ RATLSGNSFV
401: NPSTPIRLAD QYKLKGVYKL DFPTKPLTGS PRTETSIING TYRGFMEVIL QNNDTKMHTY HMSGYAFFVV GMDFGDWSEN SRGTYNKWDG IARTTAQVYP
501: GAWTAILVSL DNVGVWNLRT ENLDSWYLGQ ETYVRVVNPE VNNKTELPIP DNALFCGALS KLQKPQKVSS DAPSITGNKL KLLFTWLVVW AWIHIFQ

Best Arabidopsis Sequence Match ( AT4G12420.1 )
(BLAST)

001: MDLFKILLLV FFVNISFCFA ADPYSFYNFE VSYITASPLG VPQQVIAING KFPGPTINVT TNENLVVNVR NKLDEGLLLH WNGIQQRRVS WQDGVLGTNC
101: PIPPKWNWTY EFQVKDQIGS FFYFPSLHFQ RASGGFGSFV VNPRAIIPVP FSTPDGDITV TIGDWYIRNH TALRKALDDG KDLGMPDGVL INGKGPYRYN
201: DTLVADGIDF ETITVHPGKT YRLRVSNVGI STSLNFRIQG HNLVLAESEG SYTVQQNYTS LDIHVGQSYS FLVTMDQNAS SDYYIVASAR VVNETIWRRV
301: TGVGILKYTN SKGKAKGQLP PGPQDEFDKT FSMNQARSIR WNVSASGARP NPQGSFKYGS INVTDVYVLR NMPPVTISGK RRTTLNGISF KNPSTPIRLA
401: DKLKVKDVYK LDFPKRPLTG PAKVATSIIN GTYRGFMEVV LQNNDTKMQS YHMSGYAFFV VGMDYGEWTE NSRGTYNKWD GIARSTIQVY PGAWSAILIS
501: LDNPGAWNLR TENLDSWYLG QETYVRVVNP DENNKTEFGH PDNVLYCGAL SKLQKPQKVS SSASKSIGFT SLSMVVMALV MMMMLQH

Arabidopsis Description

SKU5Monocopper oxidase-like protein SKU5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SU40]
SUBAcon: [plasma membrane,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.