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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • extracellular 7
  • endoplasmic reticulum 5
  • vacuole 6
  • plasma membrane 6
  • golgi 5
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:plastid, secretory
BaCelLo:secretory
EpiLoc:vacuole
iPSORT:secretory
MultiLoc:extracellular
Plant-mPloc:plasma membrane
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plastid
YLoc:extracellular
 nucleus: 21132161
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
mitochondrion: 28499913
nucleus: 28499913
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH02049 Soybean nucleus 97.44 97.09
VIT_10s0116g01610.t01 Wine grape extracellular 77.15 78.15
GSMUA_Achr5P26550_001 Banana cytosol 18.28 76.92
AT4G22010.1 Thale cress extracellular 75.32 76.16
Bra013582.1-P Field mustard extracellular 75.14 75.97
PGSC0003DMT400042483 Potato extracellular 75.14 75.14
Solyc02g080670.2.1 Tomato nucleus 75.14 75.0
KRH26769 Soybean endoplasmic reticulum 70.93 72.39
KRH11453 Soybean extracellular 59.96 71.93
TraesCS7B01G359700.1 Wheat extracellular 70.38 71.03
GSMUA_Achr5P26560_001 Banana extracellular 44.79 70.61
KRH56153 Soybean mitochondrion, nucleus 69.29 70.58
HORVU7Hr1G105620.1 Barley extracellular 69.84 70.48
Os06t0678800-01 Rice extracellular 69.84 70.48
TraesCS7A01G459400.1 Wheat extracellular 70.02 70.4
KRH25361 Soybean mitochondrion, nucleus 68.92 70.2
TraesCS7D01G447200.1 Wheat extracellular 69.47 70.11
EER90222 Sorghum extracellular 69.65 69.78
KRH06000 Soybean endoplasmic reticulum 68.92 69.69
KRH17495 Soybean nucleus 69.47 69.47
EER97278 Sorghum extracellular, golgi 69.29 69.16
Zm00001d014366_P002 Maize extracellular 69.29 69.16
KRH60965 Soybean nucleus 69.1 69.1
TraesCS2D01G230800.1 Wheat extracellular 68.74 68.99
KRH24127 Soybean nucleus 68.56 68.93
KRH51639 Soybean nucleus 68.92 68.92
TraesCS2A01G224600.1 Wheat extracellular 68.56 68.81
TraesCS2B01G274800.1 Wheat vacuole 68.56 68.81
Os07t0510900-01 Rice extracellular, peroxisome 57.95 68.32
HORVU2Hr1G047260.1 Barley extracellular, golgi, vacuole 68.74 68.24
KRH29100 Soybean nucleus 68.19 68.19
Zm00001d021599_P002 Maize extracellular, plasma membrane, vacuole 68.19 66.85
KRH28523 Soybean extracellular 60.33 61.45
KRH57764 Soybean cytosol, extracellular, plastid 47.53 61.18
KRH76937 Soybean endoplasmic reticulum 59.96 60.74
KRH04707 Soybean endoplasmic reticulum 59.96 60.63
KRH04708 Soybean endoplasmic reticulum 56.67 56.99
Os07t0510833-00 Rice extracellular 10.24 56.0
KRH57767 Soybean cytosol, peroxisome 35.28 53.91
KRH57766 Soybean extracellular 18.46 53.72
KRH31599 Soybean extracellular 53.56 53.08
KRH50514 Soybean endoplasmic reticulum, extracellular, vacuole 51.92 51.45
KRG89471 Soybean mitochondrion 50.82 49.91
KRH50513 Soybean vacuole 49.91 49.64
KRH18028 Soybean cytosol 27.06 46.98
KRH38383 Soybean cytosol, extracellular, peroxisome 44.61 46.65
KRG99235 Soybean mitochondrion 10.05 44.0
KRH04081 Soybean extracellular 47.53 43.92
KRH56354 Soybean extracellular 47.17 43.65
KRH57349 Soybean endoplasmic reticulum 47.35 43.38
KRH62611 Soybean nucleus 46.8 43.24
KRH46577 Soybean mitochondrion 50.27 43.17
KRG92132 Soybean extracellular 47.17 43.14
KRG93978 Soybean extracellular 24.13 42.31
KRH34656 Soybean extracellular 45.16 41.17
KRG92134 Soybean cytosol, endoplasmic reticulum, extracellular 44.06 39.97
CDX76855 Canola cytoskeleton, cytosol, extracellular 17.18 37.75
Protein Annotations
EntrezGene:100775521Gene3D:2.60.40.420MapMan:50.1.10EMBL:ACUP02004727InterPro:Cu-oxidaseInterPro:Cu-oxidase_2
InterPro:Cu-oxidase_3InterPro:CuRO_1_AAO-likeInterPro:CupredoxinEnsemblPlantsGene:GLYMA_07G261800GO:GO:0003674GO:GO:0003824
GO:GO:0005488GO:GO:0005507GO:GO:0005575GO:GO:0005618GO:GO:0005623GO:GO:0008150
GO:GO:0008152GO:GO:0009505GO:GO:0009506GO:GO:0016491GO:GO:0016722GO:GO:0030312
GO:GO:0055114UniProt:I1KNE8InterPro:IPR008972EnsemblPlants:KRH51114ProteinID:KRH51114ProteinID:KRH51114.1
PFAM:PF00394PFAM:PF07731PFAM:PF07732PANTHER:PTHR11709PANTHER:PTHR11709:SF11SUPFAM:SSF49503
SignalP:SignalP-noTMTMHMM:TMhelixUniParc:UPI0002338F10SEG:seg::
Description
hypothetical protein
Coordinates
chr7:+:43670912..43675704
Molecular Weight (calculated)
61962.8 Da
IEP (calculated)
9.762
GRAVY (calculated)
-0.294
Length
547 amino acids
Sequence
(BLAST)
001: MRPCKCKCNV LSALILLVTF LFASVHCEDP YRYLTWKVTY GDIYPLGVKQ QGILINGQFP GPQIDAVTND NLIINVYNYL REPFLISWNG LQHRRNSWQD
101: GVYGTNCPIP PGRNLTYAIQ VKDQIGSYFY FPSLGMHKAA GAFGGIRIWS RPLIPVPFPP PAGDFTILAG DWFKLDHRRL RRLLENGHNL PFPDGLLING
201: RGWNGNTFTV DQGKTYRFRI SNVGLTTSIN FRIQGHRLKL VEVEGSHTLQ NSYSSLDIHL GQSYSVLVTA DQPVKDYYIV VSTRFTRRIL TTTSVLHYSY
301: SKTGVSGPVP PGPTLDITSS VYQARTIRWN LTASGPRPNP QGSYHYGLIK PSRTIMLANS APYINGKQRY AVNGVSYNAP DTPLKLADYF NIPGVFYVGS
401: IPTYPNGGNN AYLQTSVMGA NFHEFVEIVF QNWEDSVQSW HIDGYSFFVV GFGSGQWTAD SRVHYNLRDT VARCTTQVYP RSWTAIYMSL DNVGMWNIRS
501: ENWGRQYLGQ QLYLRVYTPS KSWRDEYPVP KNALLCGRAS GRRTRPF
Best Arabidopsis Sequence Match ( AT4G22010.1 )
(BLAST)
001: MRGSCKVSIV LLLVLINGVL GDNPYRFFTW KITYGDIYPL GVKQQGILIN GQFPGPHIDA ITNDNIIISV FNYLKEPFLI SWNGVQQRKN SWQDGVVGTT
101: CPIPPGKNFT YVIQVKDQIG SFYYFPSLAF HKAAGAFGAI RVWSRPRIPV PFSPPDGDFW LLAGDWYKTN HYVLRRLLEA GRNLPNPDGV LINGRGWGGN
201: TFTVQPGKTY RFRISNVGVA TSLNFRIQGH TMKLVEVEGS HTVQNIYTSL DIHLGQSYSV LVTANQAPQD YYIVISSRFT RKVLTTTSIL HYSNSRKGVS
301: GPVPNGPTLD IASSLYQART IRRNLTASGP RPNPQGSYHY GLIKPGRTII LANSAPWING KQRYAVNGAS FVAPDTPLKL ADYFKIPGVF NLGSIPTSPS
401: GGNGGYLQSS VMAANFREFI EVVFQNWENS VQSWHVSGYS FFVVGMDGGQ WTPGSRAKYN LRDAVSRSTV QVYPRAWTAI YIALDNVGMW NIRSENWARQ
501: YLGQQFYLRV YTSSTSYRDE YPPPKNALMC GRAKGRHTRP F
Arabidopsis Description
sks4At4g22010 [Source:UniProtKB/TrEMBL;Acc:O65449]
SUBAcon: [extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.