Factsheet for Os06t0678800-01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 6
plasma membrane 6
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

extracellular: 24083427

msms PMID: 24083427 doi

T Shinano, T Yoshimura, T Watanabe, Y Unno, M Osaki, Y Nanjo, S Komatsu

Agricultural Radiation Research Center, NARO Tohoku Agricultural Research Center , 50, Harajyukuminami, Arai, Fukushima 960-2156, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER90222	Sorghum	extracellular	89.85	89.19
Zm00001d014366_P002	Maize	extracellular	89.67	88.69
TraesCS7B01G359700.1	Wheat	extracellular	88.56	88.56
HORVU7Hr1G105620.1	Barley	extracellular	88.19	88.19
TraesCS7D01G447200.1	Wheat	extracellular	87.82	87.82
TraesCS7A01G459400.1	Wheat	extracellular	87.64	87.32
VIT_10s0116g01600.t01	Wine grape	extracellular, mitochondrion	18.08	79.67
GSMUA_Achr8P15900_001	Banana	extracellular	79.7	79.56
Solyc02g080700.1.1	Tomato	cytosol	14.21	77.78
VIT_12s0059g00770.t01	Wine grape	extracellular	75.83	75.97
Solyc07g052240.2.1	Tomato	nucleus	75.09	74.95
VIT_10s0116g01610.t01	Wine grape	extracellular	74.35	74.63
Os07t0510900-01	Rice	extracellular, peroxisome	63.65	74.35
PGSC0003DMT400074510	Potato	extracellular	73.8	73.94
KRH26769	Soybean	endoplasmic reticulum	72.51	73.32
PGSC0003DMT400074506	Potato	cytosol, extracellular, nucleus	64.39	72.71
Solyc02g080670.2.1	Tomato	nucleus	73.43	72.63
KRH56153	Soybean	mitochondrion, nucleus	71.96	72.63
KRH25361	Soybean	mitochondrion, nucleus	71.77	72.44
PGSC0003DMT400042483	Potato	extracellular	72.88	72.21
Solyc07g052230.2.1	Tomato	extracellular	70.85	71.51
KRH51114	Soybean	endoplasmic reticulum	70.48	69.84
KRH02049	Soybean	nucleus	70.48	69.58
AT4G22010.1	Thale cress	extracellular	69.37	69.5
CDX82897	Canola	extracellular	69.0	69.13
CDX79120	Canola	extracellular	68.82	68.95
Bra013582.1-P	Field mustard	extracellular	68.27	68.39
Os04t0561900-01	Rice	vacuole	62.73	61.37
KRH11453	Soybean	extracellular	50.18	59.65
Os07t0119400-01	Rice	extracellular	57.75	57.43
Os07t0510833-00	Rice	extracellular	10.33	56.0
Os01t0816700-01	Rice	plasma membrane	51.29	50.27
Os10t0508000-00	Rice	extracellular	30.63	49.4
Os06t0104300-01	Rice	extracellular	48.34	44.18
Os01t0100400-01	Rice	extracellular, plasma membrane, vacuole	48.16	44.01
Os08t0154250-01	Rice	plasma membrane	47.79	43.17
CDX76855	Canola	cytoskeleton, cytosol, extracellular	15.5	33.73
Os05t0485800-00	Rice	plasma membrane	35.79	28.49

Protein Annotations

Gene3D:2.60.40.420	EntrezGene:4341847	MapMan:50.1.10	EMBL:AK071465	ProteinID:BAD45475.1	ProteinID:BAD45542.1
ProteinID:BAF20279.1	ProteinID:BAS99128.1	InterPro:Cu-oxidase	InterPro:Cu-oxidase_2	InterPro:Cu-oxidase_3	InterPro:Cupredoxin
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005507	GO:GO:0005575	GO:GO:0005618
GO:GO:0005623	GO:GO:0008150	GO:GO:0008152	GO:GO:0009505	GO:GO:0009506	GO:GO:0016491
GO:GO:0016722	GO:GO:0030312	GO:GO:0055114	InterPro:IPR008972	EnsemblPlantsGene:Os06g0678800	EnsemblPlants:Os06t0678800-01
PFAM:PF00394	PFAM:PF07731	PFAM:PF07732	PANTHER:PTHR11709	PANTHER:PTHR11709:SF213	UniProt:Q655H5
SUPFAM:SSF49503	SignalP:SignalP-noTM	UniParc:UPI000043A2D9	RefSeq:XP_015643667.1	SEG:seg	:

Description

Similar to Pollen-specific protein NTP303 precursor. (Os06t0678800-01)

Coordinates

chr6:-:28234460..28238335

Molecular Weight (calculated)

60324.4 Da

IEP (calculated)

8.930

GRAVY (calculated)

-0.187

Length

542 amino acids

Sequence
(BLAST)

001: MEATITRFLV FFFLLLVVAV RGDDPYRFYT WNITFGDIYP LGVKQQGILI NGQFPGPQID AVTNDNIIIN VFNNLPSPFL LSWQGIQQRR SSWQDGVYGT
101: NCPIPPGGNF TYIMQFKDQI GSYYYFPSLA FHKAAGGYGG IRVLSRPGIP VPFAPPAGDF TILAGDWFKL NHTDLQGILD SGNDLPPPDG LLINGQGWNG
201: NRFTVDQGKT YRFRVSNVGI ATSVNIRIQG HSLLLVEVEG SHTVQSTYTS IDVHLGQSYS FLVTADQPPQ DYSIIVSTRF TNPVLTTTAV LHYSNSNGAL
301: STVAPPPAPT IQIDWSLNQA RSIRWNLTAS GPRPNPQGSY HYGLVNTTRT IRLANSRASI NGKLRYAVNS VSFIPADTPL KVADFYNIQG VFALGSMPDN
401: PTGGGAYLQT AVMAANMRDY VEVIFENSEN FVQSWHIDGY AFWVVGMDGG QWTPASRQSY NLRDAVARYT LQVYPQSWTA IYMPLDNVGM WNIRSESWAR
501: QYLGQQFYLR VYSPANSWRD ENPIPKNALL CGRASGRRTR PL

Best Arabidopsis Sequence Match ( AT1G76160.1 )
(BLAST)

001: MAGSASFAAA LFIGLSLLFA VTAEDPYRFF EWNITYGDIY PLGVRQQGIL INGAFPGPDI HSVTNDNLII NVYNSLDEPF LLSWNGIQQR RNSFVDGVYG
101: TTCPIPPGKN YTYILQMKDQ IGSFYYFPSL GFHKAAGGFG GIRILSRPRI PVPFPDPAGD TTVLIGDWYK ANHTDLRAQL DNGKKLPLPD GILINGRSSG
201: ATLNVEQGKT YRFRISNVGL QDSLNFRIQD HKMKVVEVEG THTLQTTFSS LDVHVGQSYS VLVTADQTPR DYYVVVSSRF TSNVLTTTGI FRYSNSAGGV
301: SGPIPGGPTI QIDWSLNQAR AIRTNLSASG PRPNPQGSYH YGMINTTRTI RLASSAGQVD GKQRYAVNSV SFKPADTPLK IADYFKIDGV YRSGSIQYQP
401: TGGGIYLDTS VMQVDYRTFV EIIFENSEDI VQSWHLDGYS FWVVGMDGGQ WSPDSRNEYN LRDAVARCTV QVYPSSWTAI LIALDNVGMW NLRSEFWARQ
501: YLGQQLYLRV YTPSTSLRDE YPIPKNALLC GRASGRSTRP L

Arabidopsis Description

sks5Sks5 [Source:UniProtKB/TrEMBL;Acc:A0A178WJJ9]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.