Factsheet for VIT_10s0116g01610.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 6
plasma membrane 7
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_10s0116g01600.t01	Wine grape	extracellular, mitochondrion	21.11	92.68
GSMUA_Achr5P26550_001	Banana	cytosol	20.0	83.08
VIT_12s0059g00770.t01	Wine grape	extracellular	79.81	79.67
PGSC0003DMT400042483	Potato	extracellular	78.7	77.7
Solyc02g080670.2.1	Tomato	nucleus	78.7	77.55
KRH51114	Soybean	endoplasmic reticulum	78.15	77.15
KRH02049	Soybean	nucleus	78.15	76.87
VIT_18s0001g00470.t01	Wine grape	extracellular	76.67	76.53
AT4G22010.1	Thale cress	extracellular	75.74	75.6
CDX79120	Canola	extracellular	75.74	75.6
CDX82897	Canola	extracellular	75.74	75.6
Bra013582.1-P	Field mustard	extracellular	75.0	74.86
HORVU7Hr1G105620.1	Barley	extracellular	74.81	74.54
Os06t0678800-01	Rice	extracellular	74.63	74.35
TraesCS7B01G359700.1	Wheat	extracellular	74.63	74.35
EER90222	Sorghum	extracellular	74.63	73.81
TraesCS7D01G447200.1	Wheat	extracellular	74.07	73.8
TraesCS7A01G459400.1	Wheat	extracellular	74.07	73.53
VIT_03s0038g03570.t01	Wine grape	extracellular	73.52	73.25
GSMUA_Achr5P26560_001	Banana	extracellular	47.04	73.2
Zm00001d014366_P002	Maize	extracellular	74.26	73.18
TraesCS2D01G230800.1	Wheat	extracellular	72.96	72.29
TraesCS2B01G274800.1	Wheat	vacuole	72.78	72.11
TraesCS2A01G224600.1	Wheat	extracellular	72.59	71.93
Os07t0510900-01	Rice	extracellular, peroxisome	61.48	71.55
HORVU2Hr1G047260.1	Barley	extracellular, golgi, vacuole	72.78	71.32
EER97278	Sorghum	extracellular, golgi	72.04	70.99
Zm00001d021599_P002	Maize	extracellular, plasma membrane, vacuole	71.11	68.82
KRH11453	Soybean	extracellular	56.67	67.11
VIT_00s0253g00040.t01	Wine grape	extracellular	63.15	63.62
Os07t0510833-00	Rice	extracellular	10.0	54.0
VIT_00s1309g00010.t01	Wine grape	vacuole	54.81	53.82
VIT_00s1643g00010.t01	Wine grape	vacuole	54.81	53.82
VIT_00s0253g00050.t01	Wine grape	extracellular, mitochondrion	55.93	50.25
VIT_07s0141g00540.t01	Wine grape	extracellular	50.56	45.88
VIT_02s0154g00080.t01	Wine grape	extracellular	50.0	45.69
VIT_13s0019g05180.t01	Wine grape	cytosol	44.26	45.52
VIT_16s0022g00680.t01	Wine grape	plasma membrane	47.96	43.75
CDX76855	Canola	cytoskeleton, cytosol, extracellular	16.67	36.14

Protein Annotations

EntrezGene:100262423	wikigene:100262423	Gene3D:2.60.40.420	MapMan:50.1.10	ProteinID:CBI23230	ProteinID:CBI23230.3
InterPro:Cu-oxidase	InterPro:Cu-oxidase_2	InterPro:Cu-oxidase_3	InterPro:CuRO_1_AAO-like	InterPro:CuRO_2_AO-like	InterPro:CuRO_3_AO-like
InterPro:Cupredoxin	UniProt:E0CVR9	EMBL:FN595248	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005507	GO:GO:0005575	GO:GO:0005618	GO:GO:0005623	GO:GO:0008150	GO:GO:0008152
GO:GO:0009505	GO:GO:0009506	GO:GO:0016020	GO:GO:0016491	GO:GO:0016722	GO:GO:0030312
GO:GO:0055114	InterPro:IPR008972	EntrezGene:LOC100262423	wikigene:LOC100262423	PFAM:PF00394	PFAM:PF07731
PFAM:PF07732	PANTHER:PTHR11709	PANTHER:PTHR11709:SF11	SUPFAM:SSF49503	SignalP:SignalP-noTM	UniParc:UPI00015CE138
ArrayExpress:VIT_10s0116g01610	EnsemblPlantsGene:VIT_10s0116g01610	EnsemblPlants:VIT_10s0116g01610.t01	unigene:Vvi.23767	RefSeq:XP_002272880	RefSeq:XP_002272880.1

Description

No Description!

Coordinates

chr10:-:866481..871411

Molecular Weight (calculated)

60741.5 Da

IEP (calculated)

9.694

GRAVY (calculated)

-0.216

Length

540 amino acids

Sequence
(BLAST)

001: MRDLCFFTIF ILGLLLPGVH GEDPYRFYTW KVTYGDIYPL GVKQQGILIN GQFPGPQIDA VTNDNLIISV YNYLREPFLI SWSGLQQRRN SWQDGMYGTN
101: CPIPPGRNMT YALQVKDQIG SFFYFPSLAF HKAAGGFGGI RILSRPRIPV PFPAPSGDFT VLAGDWFKRD HAVLKGILDR GHNLPFPDGL LINGRGWNGY
201: TFQVDQGKTY RFRISNVGLT TSINFRIQGH KMKLVEVEGS HTLQNTYSAL DIHLGQSYSV LVTADQPPQD YYVVVSSRFT SPVLTTTAIL HYSWSTKGLS
301: GPPPGGPTIQ VDWSLNQARS IRWNLTASGP RPNPQGSYHY GLITTSRTIT LANSAPMING KQRYAVNSVS FVPASTPLKL ADYFKIPGVF NLGSIPSYPT
401: WGNGYLQTSV MHADFRSYVE IVFQNWEDIV QSWHIDGYSF FVMGMDGGQW TPASRASYNL RDTVARCTVQ VYPKAWTAIY MALDNVGMWN VRSENWARQY
501: LGQQFYLRVF SPANSWRDEL PIPKNALLCG RASGRHTRPL

Best Arabidopsis Sequence Match ( AT4G22010.1 )
(BLAST)

001: MRGSCKVSIV LLLVLINGVL GDNPYRFFTW KITYGDIYPL GVKQQGILIN GQFPGPHIDA ITNDNIIISV FNYLKEPFLI SWNGVQQRKN SWQDGVVGTT
101: CPIPPGKNFT YVIQVKDQIG SFYYFPSLAF HKAAGAFGAI RVWSRPRIPV PFSPPDGDFW LLAGDWYKTN HYVLRRLLEA GRNLPNPDGV LINGRGWGGN
201: TFTVQPGKTY RFRISNVGVA TSLNFRIQGH TMKLVEVEGS HTVQNIYTSL DIHLGQSYSV LVTANQAPQD YYIVISSRFT RKVLTTTSIL HYSNSRKGVS
301: GPVPNGPTLD IASSLYQART IRRNLTASGP RPNPQGSYHY GLIKPGRTII LANSAPWING KQRYAVNGAS FVAPDTPLKL ADYFKIPGVF NLGSIPTSPS
401: GGNGGYLQSS VMAANFREFI EVVFQNWENS VQSWHVSGYS FFVVGMDGGQ WTPGSRAKYN LRDAVSRSTV QVYPRAWTAI YIALDNVGMW NIRSENWARQ
501: YLGQQFYLRV YTSSTSYRDE YPPPKNALMC GRAKGRHTRP F

Arabidopsis Description

sks4At4g22010 [Source:UniProtKB/TrEMBL;Acc:O65449]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.