Factsheet for VIT_16s0022g00680.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 6
plasma membrane 8
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_02s0154g00080.t01	Wine grape	extracellular	72.8	72.93
KRH56354	Soybean	extracellular	70.95	71.07
PGSC0003DMT400035984	Potato	plasma membrane	71.11	70.99
KRH62611	Soybean	nucleus	70.61	70.61
Solyc03g083900.2.1	Tomato	extracellular	70.44	70.44
AT4G25240.1	Thale cress	plasma membrane	67.57	67.91
Bra013877.1-P	Field mustard	plasma membrane	67.23	66.67
CDX89433	Canola	plasma membrane	67.23	66.56
CDX94466	Canola	extracellular, plasma membrane, plastid, vacuole	67.06	66.28
AT5G51480.1	Thale cress	extracellular, plasma membrane	66.22	66.22
CDY46940	Canola	plasma membrane	65.88	65.33
Bra022551.1-P	Field mustard	plasma membrane	65.88	65.33
CDY38866	Canola	extracellular	64.36	65.13
Bra029171.1-P	Field mustard	extracellular	64.36	65.13
CDX91586	Canola	extracellular	65.54	64.99
CDX99917	Canola	plasma membrane	65.03	64.49
CDY64023	Canola	extracellular	63.68	64.44
VIT_07s0141g00540.t01	Wine grape	extracellular	62.67	62.35
CDY00478	Canola	cytosol	38.01	58.29
VIT_12s0059g00770.t01	Wine grape	extracellular	45.95	50.28
VIT_18s0001g00470.t01	Wine grape	extracellular	45.61	49.91
VIT_03s0038g03570.t01	Wine grape	extracellular	45.44	49.63
VIT_00s0253g00040.t01	Wine grape	extracellular	43.92	48.51
VIT_10s0116g01600.t01	Wine grape	extracellular, mitochondrion	9.97	47.97
VIT_10s0116g01610.t01	Wine grape	extracellular	43.75	47.96
Bra034914.1-P	Field mustard	extracellular	6.25	47.44
CDY48940	Canola	extracellular	6.08	46.15
VIT_00s1309g00010.t01	Wine grape	vacuole	41.89	45.09
VIT_00s1643g00010.t01	Wine grape	vacuole	41.89	45.09
VIT_13s0019g05180.t01	Wine grape	cytosol	39.53	44.57
VIT_00s0253g00050.t01	Wine grape	extracellular, mitochondrion	43.58	42.93

Protein Annotations

EntrezGene:100253642	wikigene:100253642	Gene3D:2.60.40.420	MapMan:50.1.10	ProteinID:CBI24584	ProteinID:CBI24584.3
InterPro:Cu-oxidase	InterPro:Cu-oxidase_2	InterPro:Cu-oxidase_3	InterPro:Cupredoxin	UniProt:D7T293	EMBL:FN595506
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005507	GO:GO:0005575	GO:GO:0005623
GO:GO:0005886	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020	GO:GO:0016491	GO:GO:0016722
GO:GO:0046658	GO:GO:0055114	InterPro:IPR008972	EntrezGene:LOC100253642	wikigene:LOC100253642	PFAM:PF00394
PFAM:PF07731	PFAM:PF07732	PANTHER:PTHR11709	PANTHER:PTHR11709:SF123	SUPFAM:SSF49503	SignalP:SignalP-noTM
TIGR:TC70200	UniParc:UPI0001BE25D3	ArrayExpress:VIT_16s0022g00680	EnsemblPlantsGene:VIT_16s0022g00680	EnsemblPlants:VIT_16s0022g00680.t01	unigene:Vvi.13760
unigene:Vvi.1618	RefSeq:XP_002265025	RefSeq:XP_002265025.2	RefSeq:XP_010662409.1	SEG:seg	:

Description

No Description!

Coordinates

chr16:+:12077244..12082555

Molecular Weight (calculated)

65725.0 Da

IEP (calculated)

7.098

GRAVY (calculated)

-0.151

Length

592 amino acids

Sequence
(BLAST)

001: MEFLGHSTWV LVHIALFSGL CFAADPFVNF ELTYSFITAS PLGVPQQVIA VNGNFPGHPL NVTTNNNVVV NVTNKLNEDL LITWPGVQMR RNSWQDGVLG
101: TNCPIPSNRK WDYQFQVKDQ IGSFFYFPSL NFQRAAGGFG SFIITNRPVI SLPFAAPDGD IILLIGDWYT QNHTALRQTL NAGKDLGMPD GVLINGKGPY
201: RYNTTLVPDG IAYETVSVEP GKTYRVRVHN VGISTSLNFR IQNHNMLLVE TEGHYTSQQN YSNLDIHVGQ SYTFLVTMDQ NASTDYYIVA SARFVNESLW
301: QRVTGVAVLQ YSNSKGAATG PLPPGPDDLY DKTFSMNQAR SIRQNVSASG ARPNPQGSFH YGSINVTDTY VLRSMPLVTI NNTLRATFNG ISFVNPETPI
401: RLADQHKVKG AYKLDYPKKP LTGAPKLDIS VINGTYKGFI EVILQNNDTI MQSFHMDGYS FFVVGMDYGN WTESSRGTYN KWDAIARCTA QVFPGAWTAV
501: LISLDNAGAW NLRVENLDRW YLGQETYMRI VNPEENGETE FSAPSNILYC GALKNLQGSQ NSSNAPMLIT GWKLKLFFTL LLTLSAAISI SC

Best Arabidopsis Sequence Match ( AT4G12420.1 )
(BLAST)

001: MDLFKILLLV FFVNISFCFA ADPYSFYNFE VSYITASPLG VPQQVIAING KFPGPTINVT TNENLVVNVR NKLDEGLLLH WNGIQQRRVS WQDGVLGTNC
101: PIPPKWNWTY EFQVKDQIGS FFYFPSLHFQ RASGGFGSFV VNPRAIIPVP FSTPDGDITV TIGDWYIRNH TALRKALDDG KDLGMPDGVL INGKGPYRYN
201: DTLVADGIDF ETITVHPGKT YRLRVSNVGI STSLNFRIQG HNLVLAESEG SYTVQQNYTS LDIHVGQSYS FLVTMDQNAS SDYYIVASAR VVNETIWRRV
301: TGVGILKYTN SKGKAKGQLP PGPQDEFDKT FSMNQARSIR WNVSASGARP NPQGSFKYGS INVTDVYVLR NMPPVTISGK RRTTLNGISF KNPSTPIRLA
401: DKLKVKDVYK LDFPKRPLTG PAKVATSIIN GTYRGFMEVV LQNNDTKMQS YHMSGYAFFV VGMDYGEWTE NSRGTYNKWD GIARSTIQVY PGAWSAILIS
501: LDNPGAWNLR TENLDSWYLG QETYVRVVNP DENNKTEFGH PDNVLYCGAL SKLQKPQKVS SSASKSIGFT SLSMVVMALV MMMMLQH

Arabidopsis Description

SKU5Monocopper oxidase-like protein SKU5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SU40]
SUBAcon: [plasma membrane,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.