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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, plastid, extracellular, vacuole

Predictor Summary:
  • extracellular 5
  • endoplasmic reticulum 4
  • vacuole 5
  • plasma membrane 5
  • golgi 4
  • plastid 2
Predictors GFP MS/MS Papers
Winner Takes All:extracellular, plasma membrane, plastid, vacuole
Any Predictor:plastid, secretory
BaCelLo:secretory
ChloroP:plastid
iPSORT:secretory
MultiLoc:extracellular
Predotar:plastid
PProwler:secretory
TargetP:secretory
WoLF PSORT:vacuole
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX89433 Canola plasma membrane 97.33 97.49
AT4G25240.1 Thale cress plasma membrane 87.98 89.47
CDX91586 Canola extracellular 77.13 77.39
CDY46940 Canola plasma membrane 77.13 77.39
CDY38866 Canola extracellular 74.96 76.75
CDX99917 Canola plasma membrane 76.29 76.55
CDY64023 Canola extracellular 74.62 76.41
PGSC0003DMT400035984 Potato plasma membrane 68.11 68.8
Solyc03g083900.2.1 Tomato extracellular 67.78 68.58
KRH62611 Soybean nucleus 66.94 67.74
CDY00478 Canola cytosol 43.41 67.36
VIT_16s0022g00680.t01 Wine grape plasma membrane 66.28 67.06
KRH56354 Soybean extracellular 66.11 67.01
CDX97339 Canola plasma membrane 63.77 65.19
CDX90830 Canola extracellular 63.44 64.96
CDY04429 Canola plasma membrane 63.44 64.85
CDY68876 Canola cytosol 12.02 64.29
CDY48757 Canola extracellular, plasma membrane, vacuole 56.59 56.97
CDY05676 Canola extracellular, plasma membrane, vacuole 55.93 56.21
CDY48940 Canola extracellular 6.84 52.56
CDY68850 Canola extracellular 25.71 50.83
CDX82897 Canola extracellular 43.41 48.06
CDX79120 Canola extracellular 43.41 48.06
CDX69261 Canola extracellular 41.24 46.87
CDX73238 Canola extracellular 42.24 46.77
CDY55201 Canola extracellular 42.74 46.63
CDX87633 Canola extracellular 42.07 46.58
CDY67479 Canola extracellular 42.07 46.58
CDY35790 Canola extracellular 42.07 46.49
CDY68834 Canola extracellular, vacuole 42.57 46.45
CDY49392 Canola extracellular 34.39 46.19
CDY68812 Canola cytosol, peroxisome 34.39 46.19
CDY31468 Canola extracellular 42.4 46.1
CDY18626 Canola extracellular 41.57 46.03
CDY38959 Canola extracellular 41.4 46.01
CDY42716 Canola extracellular 41.4 45.93
CDY39058 Canola extracellular 41.74 45.87
CDX81353 Canola extracellular 41.4 45.84
CDX72617 Canola extracellular 41.4 45.84
CDY13534 Canola extracellular 41.57 45.69
CDX75611 Canola extracellular 41.24 45.66
CDY43353 Canola extracellular, plasma membrane, vacuole 41.9 45.31
CDY43557 Canola extracellular 40.9 45.29
CDX75708 Canola extracellular 41.57 45.19
CDY24189 Canola extracellular, plasma membrane, vacuole 41.74 45.13
CDY43994 Canola endoplasmic reticulum, extracellular, plasma membrane 41.57 45.11
CDY23597 Canola endoplasmic reticulum, extracellular, plasma membrane 41.4 44.93
CDX82541 Canola extracellular, plasma membrane 41.57 44.86
CDX82540 Canola extracellular 41.24 44.83
CDY01453 Canola extracellular, golgi 40.73 44.77
CDY24188 Canola endoplasmic reticulum, extracellular, plasma membrane 41.07 44.73
CDX75707 Canola extracellular, plasma membrane, vacuole 41.4 44.68
CDY10549 Canola endoplasmic reticulum, extracellular, plasma membrane 40.9 44.63
CDY23596 Canola extracellular, plasma membrane 41.07 44.32
CDX91548 Canola cytosol 36.73 44.27
CDY56013 Canola endoplasmic reticulum, extracellular, plasma membrane 40.57 44.26
CDY12788 Canola extracellular 40.07 44.2
CDY43995 Canola extracellular, plasma membrane 40.9 44.14
CDY50029 Canola extracellular 39.73 44.07
CDY43352 Canola extracellular, plasma membrane 37.4 44.01
CDX89586 Canola mitochondrion 16.03 43.24
CDX97352 Canola mitochondrion 34.72 42.62
CDY54363 Canola extracellular 38.4 42.2
CDY64276 Canola cytosol 42.57 41.53
CDX89588 Canola cytosol 18.36 40.0
CDY54804 Canola extracellular, mitochondrion, nucleus, plastid 42.4 39.75
CDY29530 Canola plastid 39.57 39.11
CDY16369 Canola mitochondrion 30.72 38.82
CDY32795 Canola cytosol 5.84 33.65
CDX76855 Canola cytoskeleton, cytosol, extracellular 12.19 29.32
Protein Annotations
Gene3D:2.60.40.420MapMan:50.1.10GO:A0A078DZ35EnsemblPlants:CDX94466ProteinID:CDX94466ProteinID:CDX94466.1
InterPro:Cu-oxidaseInterPro:Cu-oxidase_2InterPro:Cu-oxidase_3InterPro:CuRO_1_AAO-likeInterPro:CupredoxinGO:GO:0003674
GO:GO:0003824GO:GO:0005488GO:GO:0005507GO:GO:0008150GO:GO:0008152GO:GO:0016491
GO:GO:0055114EnsemblPlantsGene:GSBRNA2T00157639001InterPro:IPR008972PFAM:PF00394PFAM:PF07731PFAM:PF07732
PANTHER:PTHR11709PANTHER:PTHR11709:SF123SUPFAM:SSF49503SignalP:SignalP-noTMUniParc:UPI0004EED2D7SEG:seg
Description
BnaC01g17180D
Coordinates
chrLK031881:-:1410421..1413471
Molecular Weight (calculated)
66790.5 Da
IEP (calculated)
7.745
GRAVY (calculated)
-0.168
Length
599 amino acids
Sequence
(BLAST)
001: MGTVSLRFFS SSPSSALASL LCFLLLSGVS FAADPFVSYD FKVSYITASP LGVPQQVIAV NGQFPGPLLN ATTNYNVVVK VFNNLDESLL LTWSGIQMRR
101: NSWQDGVLGT NCPIPPRWNF TYQFQVKDQI GSFFYSPSLN FQRASGGFGP IVVNNRNIIP IPFPQPDGEI IFMIGDWYNQ DHKALRKILD SGKELGMPDG
201: VLINGKGPYK YNSSVPDGIE YLTAHVDPGK TYRIRVHNVG ISTSLNFRIQ NHNLLLVETD GHYTSQTNFT DFDIHVGQSY SFLVTMDQNA TSDYYIVASA
301: RFVNETVWQR VTGVAILHYS NSNGPASGPL PVPKTDVSAP WSAMTQPRAI RQNTSASGAR PNPQGSFHYG QINITNTYIL RSLPPTMING SLRATLNGIS
401: FVHPITPVRL ADRYKVKGAY KLDFPDRPID SRPPRLDISM INATYKGFIQ VVFQNNDTKM QSFHVDGYTF FVVGMDFGVW SEDKKGSYNN YDAISRSTIE
501: VYPGGWTAGL ISLDNVGVWN IRVENLDRWY LGEETYMRII NPEENGQTEM DPPGNVLYCG ALRNMQKDQH HSAATSILNG HLKLMFSMLM ALLALVFTF
Best Arabidopsis Sequence Match ( AT4G25240.2 )
(BLAST)
001: MAATCSLLAS FLLCFALLSA VSFAADPFVS YDFRVSYLTA SPLGVPQQVI AVNGQFPGPL LNATTNYNVV VNVFNHLDEP LLLTWPGIQM RRNSWQDGVL
101: GTNCPIPPRW NFTYQFQVKD QIGSFFYSPS LNFQRASGGF GPIVINNRDI IPIPFPQPDG ELIFIIGDWY TQDHKALRRA LDSGKELGMP DGVLINGKGP
201: YKYNSSVPDG IDYLTFHVEP GKTYRIRVHN VGISTSLNFR IQNHSLLLVE TEGHYTSQAN FTDFDVHVGQ SYSFLVTMDQ DATSDYYIVA SARFVNETVW
301: QRVTGVAILH YSNSKGPVSG PLPVPKTDVS SPWSAMSQPK TIRQNTSASG ARPNPQGSFH YGQINITNTY ILRSLPPTII NGALRATLNG ISFVNPSTPV
401: RLADRNKVKG AYKLDFPDRP FNRPLRLDRS MINATYKGFI QVVFQNNDTK IQSFHVDGYS FFVVGMDFGI WSEDKKGSYN NWDAISRSTI EVYPGGWTAV
501: LISLDNVGVW NIRVENLDRW YLGEETYMRI TNPEEDGKTE MDPPDNVLYC GALKNLQKEQ HHSAATSILN GHLKLMLLMV LLASVFRFC
Arabidopsis Description
SKS1SKS1 [Source:UniProtKB/TrEMBL;Acc:A0A178UTC9]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.