Factsheet for VIT_13s0019g05180.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
vacuole 2
cytosol 2
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g055490.1.1	Tomato	extracellular	70.48	67.64
VIT_10s0116g01600.t01	Wine grape	extracellular, mitochondrion	11.05	47.15
VIT_00s0253g00040.t01	Wine grape	extracellular	48.0	47.01
VIT_12s0059g00770.t01	Wine grape	extracellular	46.86	45.47
VIT_18s0001g00470.t01	Wine grape	extracellular	46.86	45.47
VIT_03s0038g03570.t01	Wine grape	extracellular	46.1	44.65
VIT_10s0116g01610.t01	Wine grape	extracellular	45.52	44.26
VIT_00s1309g00010.t01	Wine grape	vacuole	44.0	42.0
VIT_00s1643g00010.t01	Wine grape	vacuole	44.0	42.0
VIT_07s0141g00540.t01	Wine grape	extracellular	47.43	41.85
VIT_02s0154g00080.t01	Wine grape	extracellular	46.29	41.12
VIT_16s0022g00680.t01	Wine grape	plasma membrane	44.57	39.53
VIT_00s0253g00050.t01	Wine grape	extracellular, mitochondrion	45.14	39.43

Protein Annotations

EntrezGene:100258118	wikigene:100258118	Gene3D:2.60.40.420	MapMan:50.1.10	EMBL:AM427787	ProteinID:CAN69084
ProteinID:CAN69084.1	ProteinID:CBI31393	ProteinID:CBI31393.3	InterPro:Cu-oxidase	InterPro:Cu-oxidase_2	InterPro:Cu-oxidase_3
InterPro:CuRO_2_AO-like	InterPro:CuRO_3_AO-like	InterPro:Cupredoxin	UniProt:D7TM26	EMBL:FN595998	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005507	GO:GO:0005525
GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0016722	GO:GO:0016787	GO:GO:0055114
InterPro:IPR008972	EntrezGene:LOC100258118	wikigene:LOC100258118	PFAM:PF00394	PFAM:PF07731	PFAM:PF07732
PANTHER:PTHR11709	PANTHER:PTHR11709:SF125	SUPFAM:SSF49503	UniParc:UPI0001BE350D	ArrayExpress:VIT_13s0019g05180	EnsemblPlantsGene:VIT_13s0019g05180
EnsemblPlants:VIT_13s0019g05180.t01	RefSeq:XP_002271754	RefSeq:XP_002271754.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr13:-:7007915..7010084

Molecular Weight (calculated)

59017.5 Da

IEP (calculated)

5.877

GRAVY (calculated)

-0.277

Length

525 amino acids

Sequence
(BLAST)

001: MFPGPLVNAS TNDFIHVNVF NNLDEPLLLT WNGIQQRLNS WQDGVSGTNC PIQPGKNWTY VFQTKDQIGT FFYFPSINFQ KAAGGFGPIR VNNRIVINVP
101: FPKPEAEFDL LIGDWSYTSY KDARSLIQSN NTPGHLNLPD FVLMNGKGPY GYPGIVNYES FTVSQWKTYR FRISNVGNEL SFNFRIQNHQ MVVVETEGSY
201: TQQITLDSLD VHVGQSYSVL VTANQKEADY YIVATPKMLS TTDNSSLVGK GVLHYANSNT PVSGPLPSGP DPFDRAFSVD QAKSIRWNMT AGAARPNPQG
301: TFNVSNVTLS QTFILHASMA NISGLPRYVV NNVSYLTLDT PLKLADQFAN GSDVYQLDQF PVQSVKDAAE YGVFVSTGNH KGWIELVFKN DLDVMDAWHL
401: DGFGFYVVGF GDGDWQPELR STYNLLDPVV RSTTQVYPGG WTAVYAFLDN PGMWNLRSQN LKNWYLGQEL YVRVYDPDPN PAKERPPPEN ILLCGQYLST
501: SFSLPYASQF PRLKLYLWLA VYRKV

Best Arabidopsis Sequence Match ( AT1G21850.1 )
(BLAST)

001: MEVKSVNTTA MILGLFFLIS FVAAEDPYKF FEWHVTYGNI SPLKVAQQGI LINGKFPGPD IAAVTNDNLI INVFNHLDEP FLISWSGIRN WRNSYQDGVY
101: GTTCPIPPGK NYTYALQVKD QIGSFYYFPS LGFHKAAGGF GAIRISSRPR IPVPFPAPAG DYTVLIGDWY KTNHKDLRAQ LDNGGKLPFP DGILINGRGS
201: GATLNIEPGK TYRLRISNVG LQNSLNFRIQ NHKMKLVEVE GTHTIQTPFS SLDVHVGQSY SVLITADQPA KDYYIVVSSR FTSKILITAG VLHYSNSAGP
301: VSGPIPEAPI QLRWSFDQAR AIKTNLAASG PRPNPQGTYH YGKIKVTRTI KLASSAGNIN GKQRYAVNSA SFYPTDTPLK LADYFKIAGV YNPGSIPDQP
401: THGAIYPVTS VMQTDYKAFV EIVFENWEDI VQTWHLDGYS FFVVGMELGK WSAASRKVYN LNDAVSRCTV QVYPRSWTAI YVSLDNVGMW NLRSELWERQ
501: YLGQQFYMRV YTPSTSLRDE YLIPKNALLC GRATGHHTTT PGPLSEGSER F

Arabidopsis Description

sks8Sks8 [Source:UniProtKB/TrEMBL;Acc:A0A178W9U5]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.