Factsheet for Bra034914.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 4
vacuole 5
plasma membrane 5
golgi 4
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
EpiLoc:	vacuole
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY48940	Canola	extracellular	97.44	97.44
KRH56354	Soybean	extracellular	55.13	7.28
Bra013877.1-P	Field mustard	plasma membrane	55.13	7.2
KRH62611	Soybean	nucleus	53.85	7.09
Solyc03g083900.2.1	Tomato	extracellular	52.56	6.93
PGSC0003DMT400035984	Potato	plasma membrane	52.56	6.91
Bra029171.1-P	Field mustard	extracellular	50.0	6.67
Bra017796.1-P	Field mustard	extracellular	46.15	6.67
Bra000773.1-P	Field mustard	extracellular	48.72	6.5
Bra037137.1-P	Field mustard	extracellular	44.87	6.47
AT5G51480.1	Thale cress	extracellular, plasma membrane	48.72	6.42
Bra002825.1-P	Field mustard	extracellular, golgi, vacuole	44.87	6.32
VIT_16s0022g00680.t01	Wine grape	plasma membrane	47.44	6.25
Bra012117.1-P	Field mustard	extracellular, golgi, vacuole	43.59	6.24
Bra022551.1-P	Field mustard	plasma membrane	47.44	6.2
Bra030850.1-P	Field mustard	plasma membrane	43.59	6.19
Bra039389.1-P	Field mustard	plasma membrane	41.03	6.15
Bra018479.1-P	Field mustard	plasma membrane	46.15	6.14
Bra013582.1-P	Field mustard	extracellular	42.31	6.1
Bra036800.1-P	Field mustard	extracellular	42.31	6.1
Bra015781.1-P	Field mustard	extracellular	42.31	6.1
Bra020700.1-P	Field mustard	extracellular, plasma membrane, vacuole	46.15	6.05
Bra039388.1-P	Field mustard	extracellular, plasma membrane, vacuole	42.31	5.96
Bra001503.1-P	Field mustard	extracellular, plasma membrane	42.31	5.95
Bra038001.1-P	Field mustard	extracellular, vacuole	42.31	5.95
Bra032154.1-P	Field mustard	extracellular	41.03	5.94
Bra034943.1-P	Field mustard	extracellular	41.03	5.9
Bra008241.1-P	Field mustard	extracellular	41.03	5.84
Bra025818.1-P	Field mustard	extracellular	41.03	5.81
Bra001504.1-P	Field mustard	extracellular	41.03	5.81
Bra034679.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	41.03	5.8
Bra034680.1-P	Field mustard	extracellular, plasma membrane	41.03	5.79
Bra008223.1-P	Field mustard	cytosol, extracellular, nucleus	34.62	5.48
Bra022513.1-P	Field mustard	extracellular	34.62	4.92
Bra033564.1-P	Field mustard	extracellular, mitochondrion, nucleus, plastid	37.18	4.54
Bra030849.1-P	Field mustard	cytosol	6.41	3.03
Bra011721.1-P	Field mustard	mitochondrion, plastid	42.31	2.78
CDY00478	Canola	cytosol	3.85	0.78
Bra002824.1-P	Field mustard	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:Bra034914.1	EnsemblPlants:Bra034914.1-P	EnsemblPlantsGene:Bra034914	GO:GO:0003674	GO:GO:0005488	GO:GO:0005507
InterPro:Cu-oxidase_3	InterPro:Cupredoxin	InterPro:IPR008972	PANTHER:PTHR11709	PANTHER:PTHR11709:SF123	PFAM:PF07732
SEG:seg	SUPFAM:SSF49503	UniParc:UPI000254726A	UniProt:M4F1G8	MapMan:50.1.10	:

Description

AT4G25240 (E=3e-018) SKS1 | SKS1 (SKU5 SIMILAR 1); copper ion binding / oxidoreductase

Coordinates

chrA08:-:5330042..5330399

Molecular Weight (calculated)

9354.5 Da

IEP (calculated)

7.356

GRAVY (calculated)

-0.077

Length

78 amino acids

Sequence
(BLAST)

1: MGSFQDLCLM LRPTIMLLLE SKLNEPLLLT WPWPPGIQMR RNLWQDGLLG THFPIPLRWN FTYQFQVEDQ IGRFFYSP

Best Arabidopsis Sequence Match ( AT4G25240.1 )
(BLAST)

001: MAATCSLLAS FLLCFALLSA VSFAADPFVS YDFRVSYLTA SPLGVPQQVI AVNGQFPGPL LNATTNYNVV VNVFNHLDEP LLLTWPGIQM RRNSWQDGVL
101: GTNCPIPPRW NFTYQFQVKD QIGSFFYSPS LNFQRASGGF GPIVINNRDI IPIPFPQPDG ELIFIIGDWY TQDHKALRRA LDSGKELGMP DGVLINGKGP
201: YKYNSSVPDG IDYLTFHVEP GKTYRIRVHN VGISTSLNFR IQNHSLLLVE TEGHYTSQAN FTDFDVHVGQ SYSFLVTMDQ DATSDYYIVA SARFVNETVW
301: QRVTGVAILH YSNSKGPVSG PLPVPKTDVS SPWSAMSQPK TIRQNTSASG ARPNPQGSFH YGQINITNTY ILRSLPPTII NGALRATLNG ISFVNPSTPV
401: RLADRNKVKG AYKLDFPDRP FNRPLRLDRS MINATYKGFI QVVFQNNDTK IQSFHVDGYS FFVVGMDFGI WSEDKKGSYN NWDAISRSTI EVYPGGWTAV
501: LISLDNVGVW NIRVENLDRW YLGEETYMRI TNPEEDGKTE MDPPDNVLYC GALKNLQKEQ HHSAATSILN GHLKLMLLMV LLASVFRFC

Arabidopsis Description

SKS1SKS1 [Source:UniProtKB/TrEMBL;Acc:A0A178UTC9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.