Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 5
- vacuole 6
- plasma membrane 6
- golgi 5
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400042483 | Potato | extracellular | 97.63 | 97.81 |
| Solyc02g080700.1.1 | Tomato | cytosol | 17.15 | 94.95 |
| GSMUA_Achr5P26550_001 | Banana | cytosol | 19.34 | 81.54 |
| VIT_10s0116g01610.t01 | Wine grape | extracellular | 77.55 | 78.7 |
| KRH51114 | Soybean | endoplasmic reticulum | 75.0 | 75.14 |
| KRH02049 | Soybean | nucleus | 74.45 | 74.32 |
| AT4G22010.1 | Thale cress | extracellular | 72.63 | 73.57 |
| Os06t0678800-01 | Rice | extracellular | 72.63 | 73.43 |
| CDX82897 | Canola | extracellular | 72.26 | 73.2 |
| CDX79120 | Canola | extracellular | 72.08 | 73.01 |
| Solyc07g052240.2.1 | Tomato | nucleus | 72.08 | 72.74 |
| Bra013582.1-P | Field mustard | extracellular | 71.72 | 72.64 |
| EER90222 | Sorghum | extracellular | 72.08 | 72.34 |
| Zm00001d014366_P002 | Maize | extracellular | 72.08 | 72.08 |
| TraesCS7B01G359700.1 | Wheat | extracellular | 70.99 | 71.77 |
| TraesCS7D01G447200.1 | Wheat | extracellular | 70.8 | 71.59 |
| HORVU7Hr1G105620.1 | Barley | extracellular | 70.62 | 71.4 |
| TraesCS7A01G459400.1 | Wheat | extracellular | 70.8 | 71.32 |
| GSMUA_Achr5P26560_001 | Banana | extracellular | 44.71 | 70.61 |
| Solyc07g052230.2.1 | Tomato | extracellular | 69.16 | 70.58 |
| Os07t0510900-01 | Rice | extracellular, peroxisome | 59.67 | 70.47 |
| TraesCS2A01G224600.1 | Wheat | extracellular | 69.71 | 70.09 |
| TraesCS2D01G230800.1 | Wheat | extracellular | 69.53 | 69.91 |
| TraesCS2B01G274800.1 | Wheat | vacuole | 69.34 | 69.72 |
| EER97278 | Sorghum | extracellular, golgi | 69.53 | 69.53 |
| HORVU2Hr1G047260.1 | Barley | extracellular, golgi, vacuole | 69.34 | 68.97 |
| Solyc04g082140.2.1 | Tomato | extracellular | 67.15 | 68.15 |
| Zm00001d021599_P002 | Maize | extracellular, plasma membrane, vacuole | 68.07 | 66.85 |
| Solyc01g111970.2.1 | Tomato | extracellular | 65.15 | 66.6 |
| KRH11453 | Soybean | extracellular | 54.01 | 64.91 |
| Solyc12g094460.1.1 | Tomato | extracellular | 63.87 | 64.34 |
| Solyc12g094470.1.1 | Tomato | nucleus | 63.69 | 64.27 |
| Solyc02g065170.2.1 | Tomato | nucleus | 60.4 | 61.41 |
| Solyc02g090360.2.1 | Tomato | extracellular | 59.85 | 60.97 |
| Os07t0510833-00 | Rice | extracellular | 9.85 | 54.0 |
| Solyc05g055710.2.1 | Tomato | extracellular | 43.07 | 51.98 |
| Solyc11g008860.1.1 | Tomato | extracellular | 51.09 | 50.45 |
| Solyc01g005510.2.1 | Tomato | extracellular, plasma membrane, vacuole | 50.91 | 50.09 |
| Solyc01g056310.2.1 | Tomato | endoplasmic reticulum, extracellular, vacuole | 50.55 | 50.0 |
| Solyc03g063150.2.1 | Tomato | unclear | 50.55 | 49.82 |
| Solyc05g055490.1.1 | Tomato | extracellular | 46.72 | 46.8 |
| Solyc09g055930.2.1 | Tomato | extracellular | 49.09 | 46.06 |
| Solyc04g081520.1.1 | Tomato | extracellular | 45.26 | 45.84 |
| Solyc05g055720.1.1 | Tomato | nucleus | 7.48 | 45.56 |
| Solyc08g079090.2.1 | Tomato | extracellular | 46.17 | 42.95 |
| Solyc03g083900.2.1 | Tomato | extracellular | 45.8 | 42.4 |
| Solyc11g008030.1.1 | Tomato | endoplasmic reticulum, extracellular, plasma membrane | 46.72 | 34.97 |
| CDX76855 | Canola | cytoskeleton, cytosol, extracellular | 15.69 | 34.54 |
Protein Annotations
| Gene3D:2.60.40.420 | MapMan:50.1.10 | InterPro:Cu-oxidase | InterPro:Cu-oxidase_2 | InterPro:Cu-oxidase_3 | InterPro:CuRO_1_AAO-like |
| InterPro:CuRO_3_AO-like | InterPro:Cupredoxin | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005507 |
| GO:GO:0005575 | GO:GO:0005618 | GO:GO:0005623 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009505 |
| GO:GO:0009506 | GO:GO:0016020 | GO:GO:0016491 | GO:GO:0016722 | GO:GO:0030312 | GO:GO:0055114 |
| InterPro:IPR008972 | UniProt:K4B9T8 | PFAM:PF00394 | PFAM:PF07731 | PFAM:PF07732 | PANTHER:PTHR11709 |
| PANTHER:PTHR11709:SF11 | SUPFAM:SSF49503 | SignalP:SignalP-TM | EnsemblPlantsGene:Solyc02g080670.2 | EnsemblPlants:Solyc02g080670.2.1 | TMHMM:TMhelix |
| UniParc:UPI00027691FE | : | : | : | : | : |
Description
No Description!
Coordinates
chr2:+:44845842..44849715
Molecular Weight (calculated)
62107.9 Da
IEP (calculated)
9.698
GRAVY (calculated)
-0.301
Length
548 amino acids
Sequence
(BLAST)
(BLAST)
001: MREKSLNVHC SFIFTIILVL VTTLQCIYAD NPYRYYTWKI TYGDIYPLGV KQQGILINGQ FPGPQIDCVT NDNLIISVYN YLSEPFLISW NGIQQRRNSW
101: QDGVYGTTCP ILPGKNFTYT LQAKDQIGSY FYFPSLAMHK AAGGYGAIRV YSRPRIPVPF APPAHDFTVL AGDLYKRSHR QLKYILDSGH DLPLPDGLII
201: NGRGWNGYTF TVDQGKTYRF RISNVGIATS INFRIQGHTM KLVEVEGSHT LQTTYTSLDI HLGQSYSVLV TANQPPKDYY IVVSSRFTTR VLTTTAVLHY
301: SNSWTKVSGP PPGGPTTQIN WSLYQARSIR WNLTASGPRP NPQGSYHYGL IKPSRTIMLA NSAPYINGKQ RYAVNSVSYT DPDTPLKLAD HFNIGGVFNL
401: GSISDQPYNG NAYIGTPVMA ANFRSYVEII FQNWENTVQS WHIDGYSFFV VGMDGGQWTP ANRAHYNLRD TIARCTVQVY PKSWTAIYMA LDNVGMWNIR
501: SENWSRRYLG QQFYLRVYSP ANSWRDELPI PKNAILCGKA RGHRTRPL
101: QDGVYGTTCP ILPGKNFTYT LQAKDQIGSY FYFPSLAMHK AAGGYGAIRV YSRPRIPVPF APPAHDFTVL AGDLYKRSHR QLKYILDSGH DLPLPDGLII
201: NGRGWNGYTF TVDQGKTYRF RISNVGIATS INFRIQGHTM KLVEVEGSHT LQTTYTSLDI HLGQSYSVLV TANQPPKDYY IVVSSRFTTR VLTTTAVLHY
301: SNSWTKVSGP PPGGPTTQIN WSLYQARSIR WNLTASGPRP NPQGSYHYGL IKPSRTIMLA NSAPYINGKQ RYAVNSVSYT DPDTPLKLAD HFNIGGVFNL
401: GSISDQPYNG NAYIGTPVMA ANFRSYVEII FQNWENTVQS WHIDGYSFFV VGMDGGQWTP ANRAHYNLRD TIARCTVQVY PKSWTAIYMA LDNVGMWNIR
501: SENWSRRYLG QQFYLRVYSP ANSWRDELPI PKNAILCGKA RGHRTRPL
001: MRGSCKVSIV LLLVLINGVL GDNPYRFFTW KITYGDIYPL GVKQQGILIN GQFPGPHIDA ITNDNIIISV FNYLKEPFLI SWNGVQQRKN SWQDGVVGTT
101: CPIPPGKNFT YVIQVKDQIG SFYYFPSLAF HKAAGAFGAI RVWSRPRIPV PFSPPDGDFW LLAGDWYKTN HYVLRRLLEA GRNLPNPDGV LINGRGWGGN
201: TFTVQPGKTY RFRISNVGVA TSLNFRIQGH TMKLVEVEGS HTVQNIYTSL DIHLGQSYSV LVTANQAPQD YYIVISSRFT RKVLTTTSIL HYSNSRKGVS
301: GPVPNGPTLD IASSLYQART IRRNLTASGP RPNPQGSYHY GLIKPGRTII LANSAPWING KQRYAVNGAS FVAPDTPLKL ADYFKIPGVF NLGSIPTSPS
401: GGNGGYLQSS VMAANFREFI EVVFQNWENS VQSWHVSGYS FFVVGMDGGQ WTPGSRAKYN LRDAVSRSTV QVYPRAWTAI YIALDNVGMW NIRSENWARQ
501: YLGQQFYLRV YTSSTSYRDE YPPPKNALMC GRAKGRHTRP F
101: CPIPPGKNFT YVIQVKDQIG SFYYFPSLAF HKAAGAFGAI RVWSRPRIPV PFSPPDGDFW LLAGDWYKTN HYVLRRLLEA GRNLPNPDGV LINGRGWGGN
201: TFTVQPGKTY RFRISNVGVA TSLNFRIQGH TMKLVEVEGS HTVQNIYTSL DIHLGQSYSV LVTANQAPQD YYIVISSRFT RKVLTTTSIL HYSNSRKGVS
301: GPVPNGPTLD IASSLYQART IRRNLTASGP RPNPQGSYHY GLIKPGRTII LANSAPWING KQRYAVNGAS FVAPDTPLKL ADYFKIPGVF NLGSIPTSPS
401: GGNGGYLQSS VMAANFREFI EVVFQNWENS VQSWHVSGYS FFVVGMDGGQ WTPGSRAKYN LRDAVSRSTV QVYPRAWTAI YIALDNVGMW NIRSENWARQ
501: YLGQQFYLRV YTSSTSYRDE YPPPKNALMC GRAKGRHTRP F
Arabidopsis Description
sks4At4g22010 [Source:UniProtKB/TrEMBL;Acc:O65449]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.