Factsheet for Solyc05g055720.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
vacuole 1
mitochondrion 3
extracellular 1
plasma membrane 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY32795	Canola	cytosol	60.0	51.92
Bra002824.1-P	Field mustard	cytosol	61.11	51.89
Solyc02g080700.1.1	Tomato	cytosol	44.44	40.4
Bra030849.1-P	Field mustard	cytosol	60.0	32.73
PGSC0003DMT400060352	Potato	extracellular	87.78	14.31
Solyc03g063150.2.1	Tomato	unclear	74.44	12.05
Solyc11g008860.1.1	Tomato	extracellular	72.22	11.71
GSMUA_Achr8P01580_001	Banana	extracellular	65.56	11.43
GSMUA_Achr8P09380_001	Banana	extracellular	65.56	11.24
CDY43352	Canola	extracellular, plasma membrane	63.33	11.2
GSMUA_Achr11P...	Banana	vacuole	65.56	11.2
VIT_00s1309g00010.t01	Wine grape	vacuole	67.78	11.09
VIT_00s1643g00010.t01	Wine grape	vacuole	67.78	11.09
GSMUA_Achr9P04930_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	64.44	11.07
GSMUA_Achr5P27810_001	Banana	extracellular	64.44	11.01
Bra001504.1-P	Field mustard	extracellular	66.67	10.89
CDX97352	Canola	mitochondrion	58.89	10.86
GSMUA_AchrUn_...	Banana	extracellular	63.33	10.82
GSMUA_Achr11P...	Banana	extracellular	63.33	10.78
KRG89471	Soybean	mitochondrion	66.67	10.77
CDX82540	Canola	extracellular	65.56	10.71
CDX75708	Canola	extracellular	65.56	10.71
AT3G13400.1	Thale cress	extracellular, plasma membrane	65.56	10.71
TraesCS3A01G340200.1	Wheat	extracellular, golgi, vacuole	65.56	10.65
Solyc01g056310.2.1	Tomato	endoplasmic reticulum, extracellular, vacuole	65.56	10.65
GSMUA_Achr10P...	Banana	extracellular, golgi	66.67	10.64
TraesCS3B01G371800.1	Wheat	extracellular, golgi, vacuole	65.56	10.61
TraesCS3D01G333700.1	Wheat	extracellular, golgi, vacuole	65.56	10.61
HORVU3Hr1G080360.1	Barley	extracellular, golgi, vacuole	65.56	10.59
AT1G55560.1	Thale cress	extracellular	64.44	10.56
CDY56013	Canola	endoplasmic reticulum, extracellular, plasma membrane	64.44	10.56
Bra030850.1-P	Field mustard	plasma membrane	64.44	10.56
CDY10549	Canola	endoplasmic reticulum, extracellular, plasma membrane	64.44	10.56
KRH50513	Soybean	vacuole	64.44	10.55
TraesCS1D01G303600.1	Wheat	extracellular	64.44	10.38
EES19711	Sorghum	extracellular	64.44	10.38
CDY24188	Canola	endoplasmic reticulum, extracellular, plasma membrane	63.33	10.36
HORVU1Hr1G069130.1	Barley	extracellular, golgi, plasma membrane	64.44	10.36
Zm00001d010630_P003	Maize	extracellular, golgi, vacuole	65.56	10.35
Bra034679.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	63.33	10.33
CDY43994	Canola	endoplasmic reticulum, extracellular, plasma membrane	63.33	10.33
CDY23597	Canola	endoplasmic reticulum, extracellular, plasma membrane	63.33	10.33
KRH31599	Soybean	extracellular	63.33	10.33
Solyc01g005510.2.1	Tomato	extracellular, plasma membrane, vacuole	63.33	10.23
TraesCS1B01G314600.1	Wheat	plasma membrane	63.33	10.2
Zm00001d038521_P001	Maize	extracellular, plasma membrane, vacuole	63.33	10.2
TraesCS1A01G304100.1	Wheat	extracellular, golgi, plasma membrane	63.33	10.2
CDY50029	Canola	extracellular	61.11	10.19
KRH50514	Soybean	endoplasmic reticulum, extracellular, vacuole	62.22	10.14
Os01t0816700-01	Rice	plasma membrane	62.22	10.13
AT3G13390.1	Thale cress	extracellular, plasma membrane, vacuole	62.22	10.11
CDY54363	Canola	extracellular	61.11	10.09
CDX82541	Canola	extracellular, plasma membrane	62.22	10.09
GSMUA_Achr9P16870_001	Banana	extracellular, plasma membrane, vacuole	62.22	10.05
Zm00001d043090_P001	Maize	vacuole	62.22	10.05
Zm00001d012524_P001	Maize	vacuole	62.22	10.02
Bra034680.1-P	Field mustard	extracellular, plasma membrane	61.11	9.95
Bra039388.1-P	Field mustard	extracellular, plasma membrane, vacuole	61.11	9.93
Bra002825.1-P	Field mustard	extracellular, golgi, vacuole	61.11	9.93
CDY24189	Canola	extracellular, plasma membrane, vacuole	61.11	9.93
CDY43353	Canola	extracellular, plasma membrane, vacuole	61.11	9.93
AT1G55570.1	Thale cress	extracellular, plasma membrane	61.11	9.91
Bra001503.1-P	Field mustard	extracellular, plasma membrane	61.11	9.91
Bra038001.1-P	Field mustard	extracellular, vacuole	61.11	9.91
CDY43995	Canola	extracellular, plasma membrane	61.11	9.91
CDY23596	Canola	extracellular, plasma membrane	61.11	9.91
CDX75707	Canola	extracellular, plasma membrane, vacuole	60.0	9.73
EES01652	Sorghum	extracellular, golgi, vacuole	60.0	9.68
GSMUA_Achr3P09610_001	Banana	plastid	63.33	9.33
GSMUA_Achr5P07530_001	Banana	extracellular, golgi, vacuole	63.33	9.12
Solyc12g094460.1.1	Tomato	extracellular	53.33	8.82
Solyc02g065170.2.1	Tomato	nucleus	50.0	8.35
Solyc04g082140.2.1	Tomato	extracellular	50.0	8.33
Solyc07g052240.2.1	Tomato	nucleus	50.0	8.29
Solyc01g111970.2.1	Tomato	extracellular	48.89	8.21
Solyc02g090360.2.1	Tomato	extracellular	48.89	8.18
Solyc12g094470.1.1	Tomato	nucleus	47.78	7.92
Solyc04g081520.1.1	Tomato	extracellular	45.56	7.58
Solyc02g080670.2.1	Tomato	nucleus	45.56	7.48
Solyc07g052230.2.1	Tomato	extracellular	44.44	7.45
Bra039389.1-P	Field mustard	plasma membrane	41.11	7.12
Solyc05g055490.1.1	Tomato	extracellular	38.89	6.4
Solyc03g083900.2.1	Tomato	extracellular	40.0	6.08
Solyc08g079090.2.1	Tomato	extracellular	38.89	5.94
Solyc09g055930.2.1	Tomato	extracellular	36.67	5.65
Solyc11g008030.1.1	Tomato	endoplasmic reticulum, extracellular, plasma membrane	42.22	5.19
Zm00001d047156_P002	Maize	cytosol	11.11	4.95
Zm00001d037444_P001	Maize	mitochondrion	14.44	4.85
Os05t0485800-00	Rice	plasma membrane	16.67	2.2
HORVU4Hr1G048550.1	Barley	cytosol, extracellular	0.0	0.0
CDY68876	Canola	cytosol	0.0	0.0
CDY68850	Canola	extracellular	0.0	0.0
CDY49392	Canola	extracellular	0.0	0.0
Solyc05g055710.2.1	Tomato	extracellular	0.0	0.0
Zm00001d004806_P001	Maize	plastid	0.0	0.0

Protein Annotations

EnsemblPlants:Solyc05g055720.1.1	EnsemblPlantsGene:Solyc05g055720.1	Gene3D:2.60.40.420	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005507	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	InterPro:Cu-oxidase_2
InterPro:Cupredoxin	InterPro:IPR008972	PANTHER:PTHR11709	PANTHER:PTHR11709:SF127	PFAM:PF07731	SUPFAM:SSF49503
UniParc:UPI0002767252	UniProt:K4C2P7	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr5:+:65252792..65253064

Molecular Weight (calculated)

10218.2 Da

IEP (calculated)

7.343

GRAVY (calculated)

-0.373

Length

90 amino acids

Sequence
(BLAST)

1: MRQNYNLLDA VSRSTIQVYP NSWAAIMTTF DNAGVWNLRS NALEKQYLGH QLYLSVNAPN TSLKDEYNMP DNELLCGIIN GLPRPKPYAI

Best Arabidopsis Sequence Match ( AT3G13400.1 )
(BLAST)

001: MQGGRLLTVL VCLASTVALV SAGDPYFYYT WNVTYGTAAP LGIPQQVILI NGQFPGPNLN STSNNNVVIN VFNNLDEPFL LTWSGLQHRK NSWQDGVTGT
101: SCPIPAGTNF TYHFQPKDQI GSYFYYPSTA LHRFAGGFGG LRVNSRLLIP VPYADPEDDR TILINDWYAK SHTALKNFLD SGRTLGSPDG VLINGKSGKL
201: GGNNAPLFTM KPGKTYKYRI CNVGFKSTLN FRIQGHKMKL VEMEGSHVLQ NDYDSLDVHV GQCFAVLVTA DQVAKNYYMV ASTRFLKKEV STVGVMSYEG
301: SNVQASSDIP KAPVGWAWSL NQFRSFRWNL TASAARPNPQ GSYHYGKINI TRTIKLANTK NLVNGKVRFG FNGVSHVDTE TPLKLAEYFG MSEKVFKYNV
401: IKDEPAAKIT TLTVEPNVLN ITFRTFVEVV FENHEKSMQS FHLDGYSFFA VASEPGRWTP EKRNNYNLLD AVSRHTVQVY PKSWSAILLT FDNAGMWNIR
501: SENWERRYLG QQLYVSVLSP EKSLRDEYNI PLNTNLCGIV KGLPLPTPYT I

Arabidopsis Description

sks13AT3g13400/MRP15_3 [Source:UniProtKB/TrEMBL;Acc:Q9LJF1]
SUBAcon: [plasma membrane,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.