Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, extracellular
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 5
- golgi 5
- extracellular 6
- vacuole 4
- plasma membrane 5
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra030849.1-P | Field mustard | cytosol | 28.47 | 95.76 |
| CDY68876 | Canola | cytosol | 19.28 | 95.54 |
| CDY50029 | Canola | extracellular | 89.55 | 92.04 |
| CDX97352 | Canola | mitochondrion | 80.9 | 92.01 |
| Bra038001.1-P | Field mustard | extracellular, vacuole | 91.89 | 91.89 |
| AT3G13390.1 | Thale cress | extracellular, plasma membrane, vacuole | 90.27 | 90.43 |
| CDY54363 | Canola | extracellular | 87.75 | 89.36 |
| AT3G13400.1 | Thale cress | extracellular, plasma membrane | 76.58 | 77.13 |
| AT1G55560.1 | Thale cress | extracellular | 75.14 | 75.96 |
| VIT_00s1643g00010.t01 | Wine grape | vacuole | 71.17 | 71.82 |
| VIT_00s1309g00010.t01 | Wine grape | vacuole | 71.17 | 71.82 |
| GSMUA_Achr5P27810_001 | Banana | extracellular | 66.31 | 69.83 |
| GSMUA_Achr11P... | Banana | vacuole | 66.13 | 69.64 |
| GSMUA_Achr8P01580_001 | Banana | extracellular | 64.32 | 69.19 |
| GSMUA_Achr9P04930_001 | Banana | endoplasmic reticulum, extracellular, plasma membrane | 64.5 | 68.32 |
| HORVU4Hr1G048550.1 | Barley | cytosol, extracellular | 7.75 | 68.25 |
| PGSC0003DMT400041845 | Potato | extracellular, plasma membrane, vacuole | 67.93 | 67.56 |
| GSMUA_Achr8P09380_001 | Banana | extracellular | 63.42 | 67.05 |
| PGSC0003DMT400002554 | Potato | endoplasmic reticulum, extracellular, golgi | 66.85 | 66.73 |
| GSMUA_AchrUn_... | Banana | extracellular | 63.06 | 66.41 |
| Solyc11g008860.1.1 | Tomato | extracellular | 66.31 | 66.31 |
| Solyc03g063150.2.1 | Tomato | unclear | 66.13 | 66.01 |
| PGSC0003DMT400016672 | Potato | endoplasmic reticulum | 65.41 | 65.52 |
| Solyc01g056310.2.1 | Tomato | endoplasmic reticulum, extracellular, vacuole | 65.23 | 65.34 |
| GSMUA_Achr9P16870_001 | Banana | extracellular, plasma membrane, vacuole | 65.41 | 65.17 |
| GSMUA_Achr11P... | Banana | extracellular | 61.8 | 64.84 |
| Solyc01g005510.2.1 | Tomato | extracellular, plasma membrane, vacuole | 65.05 | 64.81 |
| Solyc05g055710.2.1 | Tomato | extracellular | 52.79 | 64.54 |
| PGSC0003DMT400082031 | Potato | extracellular, plasma membrane, vacuole | 64.68 | 64.45 |
| GSMUA_Achr10P... | Banana | extracellular, golgi | 65.05 | 64.01 |
| PGSC0003DMT400060352 | Potato | extracellular | 63.6 | 63.95 |
| PGSC0003DMT400010905 | Potato | extracellular, plasma membrane | 64.32 | 62.96 |
| Solyc05g055720.1.1 | Tomato | nucleus | 9.91 | 61.11 |
| EES01652 | Sorghum | extracellular, golgi, vacuole | 61.44 | 61.11 |
| HORVU3Hr1G080360.1 | Barley | extracellular, golgi, vacuole | 61.26 | 61.04 |
| Zm00001d043090_P001 | Maize | vacuole | 60.9 | 60.68 |
| Os01t0816700-01 | Rice | plasma membrane | 60.36 | 60.58 |
| GSMUA_Achr3P09610_001 | Banana | plastid | 66.67 | 60.56 |
| TraesCS1B01G314600.1 | Wheat | plasma membrane | 60.9 | 60.47 |
| TraesCS3D01G333700.1 | Wheat | extracellular, golgi, vacuole | 60.54 | 60.43 |
| TraesCS3A01G340200.1 | Wheat | extracellular, golgi, vacuole | 60.18 | 60.29 |
| Zm00001d012524_P001 | Maize | vacuole | 60.72 | 60.29 |
| TraesCS3B01G371800.1 | Wheat | extracellular, golgi, vacuole | 60.36 | 60.25 |
| HORVU1Hr1G069130.1 | Barley | extracellular, golgi, plasma membrane | 60.72 | 60.18 |
| TraesCS1D01G303600.1 | Wheat | extracellular | 60.36 | 59.93 |
| TraesCS1A01G304100.1 | Wheat | extracellular, golgi, plasma membrane | 60.0 | 59.57 |
| Zm00001d038521_P001 | Maize | extracellular, plasma membrane, vacuole | 60.0 | 59.57 |
| EES19711 | Sorghum | extracellular | 59.64 | 59.21 |
| Zm00001d010630_P003 | Maize | extracellular, golgi, vacuole | 60.36 | 58.77 |
| GSMUA_Achr5P07530_001 | Banana | extracellular, golgi, vacuole | 64.86 | 57.6 |
| AT1G21860.1 | Thale cress | extracellular | 52.97 | 54.65 |
| AT1G41830.1 | Thale cress | extracellular | 53.33 | 54.61 |
| AT1G76160.1 | Thale cress | extracellular | 52.79 | 54.16 |
| AT4G22010.1 | Thale cress | extracellular | 51.53 | 52.87 |
| AT2G23630.2 | Thale cress | extracellular | 51.89 | 52.75 |
| AT1G21850.1 | Thale cress | extracellular | 51.35 | 51.72 |
| AT5G66920.1 | Thale cress | extracellular, plasma membrane, vacuole | 50.81 | 51.65 |
| AT4G37160.1 | Thale cress | extracellular | 49.73 | 51.02 |
| AT4G38420.1 | Thale cress | extracellular | 49.73 | 50.27 |
| AT4G28090.1 | Thale cress | extracellular | 45.95 | 46.62 |
| AT1G75790.1 | Thale cress | extracellular | 44.68 | 45.5 |
| AT4G12420.2 | Thale cress | extracellular, plasma membrane | 45.77 | 43.27 |
| Zm00001d047156_P002 | Maize | cytosol | 15.68 | 43.07 |
| AT4G25240.1 | Thale cress | plasma membrane | 45.23 | 42.61 |
| AT5G51480.1 | Thale cress | extracellular, plasma membrane | 45.41 | 42.57 |
| AT5G48450.1 | Thale cress | extracellular | 46.85 | 41.87 |
| Zm00001d037444_P001 | Maize | mitochondrion | 18.38 | 38.06 |
| Os05t0485800-00 | Rice | plasma membrane | 40.18 | 32.75 |
| Zm00001d004806_P001 | Maize | plastid | 4.5 | 29.41 |
Protein Annotations
| Gene3D:2.60.40.420 | MapMan:50.1.10 | EntrezGene:842006 | ProteinID:AAD10638.1 | ProteinID:AEE33267.1 | EMBL:AF367325 |
| ArrayExpress:AT1G55570 | EnsemblPlantsGene:AT1G55570 | RefSeq:AT1G55570 | TAIR:AT1G55570 | RefSeq:AT1G55570-TAIR-G | EnsemblPlants:AT1G55570.1 |
| TAIR:AT1G55570.1 | EMBL:AY133602 | Unigene:At.19124 | InterPro:Cu-oxidase | InterPro:Cu-oxidase_2 | InterPro:Cu-oxidase_3 |
| InterPro:CuRO_1_AAO-like | InterPro:CuRO_2_AO-like | InterPro:CuRO_3_AO-like | InterPro:Cupredoxin | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005488 | GO:GO:0005507 | GO:GO:0005575 | GO:GO:0005618 | GO:GO:0005623 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009505 | GO:GO:0009506 | GO:GO:0016491 | GO:GO:0016722 | GO:GO:0030312 |
| GO:GO:0055114 | InterPro:IPR008972 | RefSeq:NP_175953.1 | PFAM:PF00394 | PFAM:PF07731 | PFAM:PF07732 |
| PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001185 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009009 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0025022 |
| PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR11709 | PANTHER:PTHR11709:SF27 | UniProt:Q9ZVV4 | SUPFAM:SSF49503 |
| SignalP:SignalP-noTM | UniParc:UPI00000A28E2 | SEG:seg | Symbol:sks12 | : | : |
Description
sks12At1g55570/T5A14_1 [Source:UniProtKB/TrEMBL;Acc:Q9ZVV4]
Coordinates
chr1:+:20757767..20760268
Molecular Weight (calculated)
62216.3 Da
IEP (calculated)
9.186
GRAVY (calculated)
-0.382
Length
555 amino acids
Sequence
(BLAST)
(BLAST)
001: MKGGVKLLAV CLCVATATVM MVQAEDPYFH HVWNVTYGTA SPLGVPQQVI LINGQFPGPN INSTSNNNVI VNVFNNLDEP FLITWAGIQH RKNCWQDGTA
101: GTMCPIPPGQ NFTYHFQPKD QIGSYFYYPT TAMHRAAGGF GGLRVNSRLL IPVPYADPED DYTILINDWY TKSHTQLKKF LDSGRTIGRP DGILINGKSG
201: KTDGSDKPLF TLKPGKTYRV RICNVGLKAS LNFRIQNHKM KLVEMEGSHV LQNDYDSLDV HVGQCFGVIV TADQEPKDYY MIASTRFLKK PLTTTGLLRY
301: EGGKGPASSQ LPAAPVGWAW SLNQYRSFRW NLTASAARPN PQGSYHYGKI NITRTIKLVN TQGKVDGKLR YALSGVSHTD PETPLKLAEY FGVADKVFKY
401: DTISDNPNPD QIKNIKIEPN VLNITHRTFI EVVFENHERS VQSWHLDGYS FFAVAVEPGT WTPEKRKNYN LLDAVSRHTV QVYPKCWAAI LLTFDNCGMW
501: NIRSENAERR YLGQQLYASV LSPEKSLRDE YNMPETSLQC GLVKGKPKVN PYAGA
101: GTMCPIPPGQ NFTYHFQPKD QIGSYFYYPT TAMHRAAGGF GGLRVNSRLL IPVPYADPED DYTILINDWY TKSHTQLKKF LDSGRTIGRP DGILINGKSG
201: KTDGSDKPLF TLKPGKTYRV RICNVGLKAS LNFRIQNHKM KLVEMEGSHV LQNDYDSLDV HVGQCFGVIV TADQEPKDYY MIASTRFLKK PLTTTGLLRY
301: EGGKGPASSQ LPAAPVGWAW SLNQYRSFRW NLTASAARPN PQGSYHYGKI NITRTIKLVN TQGKVDGKLR YALSGVSHTD PETPLKLAEY FGVADKVFKY
401: DTISDNPNPD QIKNIKIEPN VLNITHRTFI EVVFENHERS VQSWHLDGYS FFAVAVEPGT WTPEKRKNYN LLDAVSRHTV QVYPKCWAAI LLTFDNCGMW
501: NIRSENAERR YLGQQLYASV LSPEKSLRDE YNMPETSLQC GLVKGKPKVN PYAGA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.