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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: unclear

Predictor Summary:
  • extracellular 6
  • endoplasmic reticulum 6
  • vacuole 6
  • plasma membrane 6
  • golgi 6
Predictors GFP MS/MS Papers
Winner Takes All:unclear
Any Predictor:secretory
BaCelLo:secretory
EpiLoc:vacuole
iPSORT:secretory
MultiLoc:extracellular
Plant-mPloc:plasma membrane
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:endoplasmic reticulum
YLoc:golgi
 unclear: 26455813
msms PMID: 26455813 doi
P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400002554 Potato endoplasmic reticulum, extracellular, golgi 96.4 96.4
Solyc11g008860.1.1 Tomato extracellular 75.36 75.5
Solyc05g055720.1.1 Tomato nucleus 12.05 74.44
CDY68876 Canola cytosol 14.93 74.11
Solyc05g055710.2.1 Tomato extracellular 59.71 73.13
VIT_00s1309g00010.t01 Wine grape vacuole 70.5 71.27
VIT_00s1643g00010.t01 Wine grape vacuole 70.5 71.27
HORVU4Hr1G048550.1 Barley cytosol, extracellular 7.91 69.84
Solyc01g056310.2.1 Tomato endoplasmic reticulum, extracellular, vacuole 68.53 68.77
Solyc01g005510.2.1 Tomato extracellular, plasma membrane, vacuole 68.7 68.58
KRH31599 Soybean extracellular 67.63 68.12
KRH50513 Soybean vacuole 66.73 67.45
GSMUA_Achr5P27810_001 Banana extracellular 63.49 66.98
CDY50029 Canola extracellular 64.93 66.85
KRG89471 Soybean mitochondrion 66.91 66.79
GSMUA_Achr11P... Banana vacuole 63.13 66.6
AT1G55570.1 Thale cress extracellular, plasma membrane 66.01 66.13
CDY10549 Canola endoplasmic reticulum, extracellular, plasma membrane 65.29 66.12
CDX97352 Canola mitochondrion 57.91 65.98
CDY43995 Canola extracellular, plasma membrane 65.65 65.77
CDX82541 Canola extracellular, plasma membrane 65.65 65.77
CDY23596 Canola extracellular, plasma membrane 65.65 65.77
Bra038001.1-P Field mustard extracellular, vacuole 65.65 65.77
Bra001503.1-P Field mustard extracellular, plasma membrane 65.65 65.77
CDY56013 Canola endoplasmic reticulum, extracellular, plasma membrane 64.93 65.76
Bra030850.1-P Field mustard plasma membrane 64.93 65.76
GSMUA_Achr8P01580_001 Banana extracellular 60.97 65.7
CDY24189 Canola extracellular, plasma membrane, vacuole 65.29 65.52
CDX75707 Canola extracellular, plasma membrane, vacuole 65.11 65.23
AT1G55560.1 Thale cress extracellular 64.39 65.21
Bra039388.1-P Field mustard extracellular, plasma membrane, vacuole 64.93 65.16
AT3G13390.1 Thale cress extracellular, plasma membrane, vacuole 64.93 65.16
GSMUA_Achr8P09380_001 Banana extracellular 61.51 65.14
KRH50514 Soybean endoplasmic reticulum, extracellular, vacuole 64.57 65.04
GSMUA_Achr11P... Banana extracellular 61.87 65.03
CDY43353 Canola extracellular, plasma membrane, vacuole 64.75 64.98
Bra030849.1-P Field mustard cytosol 19.24 64.85
CDY49392 Canola extracellular 51.98 64.8
Bra001504.1-P Field mustard extracellular 64.21 64.79
CDX82540 Canola extracellular 64.21 64.79
CDX75708 Canola extracellular 64.21 64.79
GSMUA_AchrUn_... Banana extracellular 60.97 64.33
GSMUA_Achr9P04930_001 Banana endoplasmic reticulum, extracellular, plasma membrane 60.61 64.31
AT3G13400.1 Thale cress extracellular, plasma membrane 63.67 64.25
CDY43352 Canola extracellular, plasma membrane 58.45 63.85
CDY24188 Canola endoplasmic reticulum, extracellular, plasma membrane 63.13 63.82
CDY43994 Canola endoplasmic reticulum, extracellular, plasma membrane 63.31 63.77
Bra034679.1-P Field mustard endoplasmic reticulum, extracellular, plasma membrane 63.31 63.77
CDY54363 Canola extracellular 62.41 63.67
Bra039389.1-P Field mustard plasma membrane 59.53 63.65
CDY23597 Canola endoplasmic reticulum, extracellular, plasma membrane 63.13 63.59
Bra002825.1-P Field mustard extracellular, golgi, vacuole 63.31 63.54
CDY68850 Canola extracellular 34.35 63.04
GSMUA_Achr10P... Banana extracellular, golgi 62.41 61.52
Bra034680.1-P Field mustard extracellular, plasma membrane 61.15 61.48
GSMUA_Achr9P16870_001 Banana extracellular, plasma membrane, vacuole 61.51 61.4
HORVU3Hr1G080360.1 Barley extracellular, golgi, vacuole 61.51 61.4
Os01t0816700-01 Rice plasma membrane 60.97 61.3
TraesCS3A01G340200.1 Wheat extracellular, golgi, vacuole 60.43 60.65
TraesCS3D01G333700.1 Wheat extracellular, golgi, vacuole 60.43 60.43
TraesCS3B01G371800.1 Wheat extracellular, golgi, vacuole 60.43 60.43
EES01652 Sorghum extracellular, golgi, vacuole 60.61 60.39
Zm00001d043090_P001 Maize vacuole 60.25 60.14
Zm00001d012524_P001 Maize vacuole 60.07 59.75
HORVU1Hr1G069130.1 Barley extracellular, golgi, plasma membrane 60.07 59.64
Zm00001d038521_P001 Maize extracellular, plasma membrane, vacuole 59.17 58.86
TraesCS1A01G304100.1 Wheat extracellular, golgi, plasma membrane 58.99 58.68
TraesCS1B01G314600.1 Wheat plasma membrane 58.99 58.68
TraesCS1D01G303600.1 Wheat extracellular 58.81 58.5
EES19711 Sorghum extracellular 58.63 58.32
Zm00001d010630_P003 Maize extracellular, golgi, vacuole 59.35 57.89
GSMUA_Achr5P07530_001 Banana extracellular, golgi, vacuole 62.23 55.36
GSMUA_Achr3P09610_001 Banana plastid 60.79 55.32
Bra002824.1-P Field mustard cytosol 10.43 54.72
CDY32795 Canola cytosol 10.07 53.85
Solyc02g065170.2.1 Tomato nucleus 51.26 52.88
Solyc01g111970.2.1 Tomato extracellular 50.9 52.8
Solyc02g090360.2.1 Tomato extracellular 50.0 51.67
Solyc07g052240.2.1 Tomato nucleus 49.82 51.01
Solyc07g052230.2.1 Tomato extracellular 48.92 50.65
Solyc02g080670.2.1 Tomato nucleus 49.82 50.55
Solyc12g094460.1.1 Tomato extracellular 48.92 50.0
Solyc04g082140.2.1 Tomato extracellular 48.2 49.63
Solyc12g094470.1.1 Tomato nucleus 46.22 47.33
Solyc02g080700.1.1 Tomato cytosol 7.91 44.44
Zm00001d047156_P002 Maize cytosol 15.65 43.07
Solyc09g055930.2.1 Tomato extracellular 45.14 42.98
Solyc03g083900.2.1 Tomato extracellular 45.68 42.91
Solyc08g079090.2.1 Tomato extracellular 45.14 42.61
Solyc04g081520.1.1 Tomato extracellular 41.37 42.51
Solyc05g055490.1.1 Tomato extracellular 39.75 40.4
Zm00001d037444_P001 Maize mitochondrion 17.99 37.31
Os05t0485800-00 Rice plasma membrane 39.21 32.01
Solyc11g008030.1.1 Tomato endoplasmic reticulum, extracellular, plasma membrane 40.83 31.01
Zm00001d004806_P001 Maize plastid 4.68 30.59
Protein Annotations
Gene3D:2.60.40.420MapMan:50.1.10InterPro:Cu-oxidaseInterPro:Cu-oxidase_2InterPro:Cu-oxidase_3InterPro:Cupredoxin
GO:GO:0003674GO:GO:0003824GO:GO:0005488GO:GO:0005507GO:GO:0005575GO:GO:0005618
GO:GO:0005623GO:GO:0008150GO:GO:0008152GO:GO:0009505GO:GO:0009506GO:GO:0016491
GO:GO:0016722GO:GO:0030312GO:GO:0055114InterPro:IPR008972UniProt:K4BH63PFAM:PF00394
PFAM:PF07731PFAM:PF07732PANTHER:PTHR11709PANTHER:PTHR11709:SF27SUPFAM:SSF49503SignalP:SignalP-noTM
EnsemblPlantsGene:Solyc03g063150.2EnsemblPlants:Solyc03g063150.2.1UniParc:UPI0002767638SEG:seg::
Description
No Description!
Coordinates
chr3:+:33380491..33382600
Molecular Weight (calculated)
62404.5 Da
IEP (calculated)
8.998
GRAVY (calculated)
-0.344
Length
556 amino acids
Sequence
(BLAST)
001: MEKLRFGLVL MVLCLSTSLV KGGDPTVTFE WKVTYGTISP LGVPQQVILI NDKFPGPVIN GTSNNNIVVN VFNQLDEPFL FTWNGIQQRK NSWQEGTLGT
101: NCPIPPGGNF TYHFQVKDQI GTFFYYPTTA LHRAAGGYGG LSVHSRALIP IPFDINPADE FFVLVSDWYT KSHTQLRKFL DSGRSMGRPD GVIINGKGGN
201: GDGKDEPMFS MTPGKTYRYR FCNAGNKDSI NVRIQGHTMK LVEIEGSHVV QNMYDSLDIH LGQCVSVLVT ADKDPKDYLL VASTRFTKEP HTATSIIRYT
301: NGKGPASPEL PKAPIGWAWS LNQFRSFRWN LTASAARPNP QGSYHYGQIN ITRTIKLVNT AGTVDGKLRY AFNGISHVNP TTPIKLAEYY GVEDKVFKYD
401: LMKDEYEPPA GKAEEKITLA PNVVKVIYRN YVEIIFENHE KSVQSFHLAG YSFFAVAIEP GKWTPEKRKN YNLLDAVSRN TIQVYPNSWA AIMTTLDNAG
501: LWNLRSNSLE RQYLGQQLYF SALSPKRDLK DEYNMPDNDV LCGIIKDMPL PKPYSV
Best Arabidopsis Sequence Match ( AT1G55570.1 )
(BLAST)
001: MKGGVKLLAV CLCVATATVM MVQAEDPYFH HVWNVTYGTA SPLGVPQQVI LINGQFPGPN INSTSNNNVI VNVFNNLDEP FLITWAGIQH RKNCWQDGTA
101: GTMCPIPPGQ NFTYHFQPKD QIGSYFYYPT TAMHRAAGGF GGLRVNSRLL IPVPYADPED DYTILINDWY TKSHTQLKKF LDSGRTIGRP DGILINGKSG
201: KTDGSDKPLF TLKPGKTYRV RICNVGLKAS LNFRIQNHKM KLVEMEGSHV LQNDYDSLDV HVGQCFGVIV TADQEPKDYY MIASTRFLKK PLTTTGLLRY
301: EGGKGPASSQ LPAAPVGWAW SLNQYRSFRW NLTASAARPN PQGSYHYGKI NITRTIKLVN TQGKVDGKLR YALSGVSHTD PETPLKLAEY FGVADKVFKY
401: DTISDNPNPD QIKNIKIEPN VLNITHRTFI EVVFENHERS VQSWHLDGYS FFAVAVEPGT WTPEKRKNYN LLDAVSRHTV QVYPKCWAAI LLTFDNCGMW
501: NIRSENAERR YLGQQLYASV LSPEKSLRDE YNMPETSLQC GLVKGKPKVN PYAGA
Arabidopsis Description
sks12At1g55570/T5A14_1 [Source:UniProtKB/TrEMBL;Acc:Q9ZVV4]
SUBAcon: [plasma membrane,extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.