Factsheet for Solyc04g082140.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 7
plasma membrane 6
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

extracellular: 22364583
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400025805	Potato	extracellular	97.96	97.96
KRH60965	Soybean	nucleus	81.3	80.26
KRH51639	Soybean	nucleus	80.74	79.71
Bra015781.1-P	Field mustard	extracellular	79.81	79.67
CDX73238	Canola	extracellular	79.81	79.67
CDX87633	Canola	extracellular	79.63	79.48
KRH06000	Soybean	endoplasmic reticulum	79.26	79.11
KRH17495	Soybean	nucleus	79.63	78.61
VIT_18s0001g00470.t01	Wine grape	extracellular	78.7	78.56
Bra008241.1-P	Field mustard	extracellular	79.07	77.92
AT1G76160.1	Thale cress	extracellular	77.96	77.82
CDY55201	Canola	extracellular	79.07	77.78
CDY68834	Canola	extracellular, vacuole	79.07	77.78
Solyc12g094460.1.1	Tomato	extracellular	77.78	77.21
AT1G41830.1	Thale cress	extracellular	77.22	76.94
Bra034943.1-P	Field mustard	extracellular	77.04	76.75
CDY35790	Canola	extracellular	77.04	76.75
CDY67479	Canola	extracellular	76.85	76.71
Solyc12g094470.1.1	Tomato	nucleus	75.56	75.14
Solyc01g111970.2.1	Tomato	extracellular	71.67	72.2
Solyc07g052240.2.1	Tomato	nucleus	71.3	70.9
AT1G21860.1	Thale cress	extracellular	69.81	70.07
AT1G21850.1	Thale cress	extracellular	71.11	69.69
Solyc07g052230.2.1	Tomato	extracellular	67.96	68.34
CDY31468	Canola	extracellular	69.26	67.88
Solyc02g080670.2.1	Tomato	nucleus	68.15	67.15
Bra025818.1-P	Field mustard	extracellular	68.52	67.15
Solyc02g080700.1.1	Tomato	cytosol	12.22	66.67
Solyc02g065170.2.1	Tomato	nucleus	58.89	59.0
Solyc02g090360.2.1	Tomato	extracellular	57.04	57.25
CDY29530	Canola	plastid	61.85	55.12
Solyc01g056310.2.1	Tomato	endoplasmic reticulum, extracellular, vacuole	52.59	51.26
Solyc05g055710.2.1	Tomato	extracellular	42.59	50.66
Solyc11g008860.1.1	Tomato	extracellular	51.48	50.09
Solyc05g055720.1.1	Tomato	nucleus	8.33	50.0
Solyc01g005510.2.1	Tomato	extracellular, plasma membrane, vacuole	51.11	49.55
Solyc03g063150.2.1	Tomato	unclear	49.63	48.2
KRH57767	Soybean	cytosol, peroxisome	31.48	47.49
Solyc04g081520.1.1	Tomato	extracellular	46.48	46.4
Solyc09g055930.2.1	Tomato	extracellular	49.44	45.72
Solyc05g055490.1.1	Tomato	extracellular	45.0	44.42
Solyc08g079090.2.1	Tomato	extracellular	47.59	43.63
Solyc03g083900.2.1	Tomato	extracellular	47.41	43.24
Solyc11g008030.1.1	Tomato	endoplasmic reticulum, extracellular, plasma membrane	44.07	32.51

Protein Annotations

Gene3D:2.60.40.420	MapMan:50.1.10	InterPro:Cu-oxidase	InterPro:Cu-oxidase_2	InterPro:Cu-oxidase_3	InterPro:CuRO_1_AAO-like
InterPro:Cupredoxin	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005507	GO:GO:0005575
GO:GO:0005618	GO:GO:0005623	GO:GO:0008150	GO:GO:0008152	GO:GO:0009505	GO:GO:0009506
GO:GO:0016491	GO:GO:0016722	GO:GO:0016787	GO:GO:0030312	GO:GO:0030599	GO:GO:0055114
InterPro:IPR008972	UniProt:K4BVU1	PFAM:PF00394	PFAM:PF07731	PFAM:PF07732	PANTHER:PTHR11709
PANTHER:PTHR11709:SF90	SUPFAM:SSF49503	SignalP:SignalP-noTM	EnsemblPlantsGene:Solyc04g082140.2	EnsemblPlants:Solyc04g082140.2.1	UniParc:UPI0002766488
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr4:-:65917721..65922594

Molecular Weight (calculated)

60056.3 Da

IEP (calculated)

9.325

GRAVY (calculated)

-0.261

Length

540 amino acids

Sequence
(BLAST)

001: MLPLKFAVAV FLVVLIGNSV VAEDPYRYFD WNVTYGTIYP LGVPQQGILI NGQFPGPDIN SVTNDNLVIN IHNSLDEPFL LSWNGVQNRR NSFVDGVYGT
101: TCPIPPGRNN TFNLQVKDQI GSFYYFPSLA FHKAAGGFGG IRILSRPRIP VPFPDPANDY TILIGDWYKK NHTDLKAILD GGRKLPFPDG ILINGRGPNG
201: VTFTVDQGKT YRLRISNVGL QNSLNFRVEG HKMTLVEVEG THTLQTTYSS LDVHAGQSYS VLITANQEAK DHYIVVSSRF TTPVLTTTAV LHYSSSNTPV
301: SGPPPGGPTI QIDWSLNQAR SIRTNLSASG PRPNPQGSYH YGMINTTKTI RLASSAGQVN GKQRYAVNSV SFVPLDTPLK LLDYFKIGGF RVGSIPDSPT
401: GGGIYQDTSV LGVNYRQFIE IIFENNEDIV QSWHLDGYSF WVVGMDGGQW TQASRNGYNL RDAVSRCTTQ VYPKSWTAIY IALDNVGMWN LRTEFWARQY
501: LGQQLYMRVY TDSTSLRDEY PIPRGARLCG KVANRHTRPL

Best Arabidopsis Sequence Match ( AT1G76160.1 )
(BLAST)

001: MAGSASFAAA LFIGLSLLFA VTAEDPYRFF EWNITYGDIY PLGVRQQGIL INGAFPGPDI HSVTNDNLII NVYNSLDEPF LLSWNGIQQR RNSFVDGVYG
101: TTCPIPPGKN YTYILQMKDQ IGSFYYFPSL GFHKAAGGFG GIRILSRPRI PVPFPDPAGD TTVLIGDWYK ANHTDLRAQL DNGKKLPLPD GILINGRSSG
201: ATLNVEQGKT YRFRISNVGL QDSLNFRIQD HKMKVVEVEG THTLQTTFSS LDVHVGQSYS VLVTADQTPR DYYVVVSSRF TSNVLTTTGI FRYSNSAGGV
301: SGPIPGGPTI QIDWSLNQAR AIRTNLSASG PRPNPQGSYH YGMINTTRTI RLASSAGQVD GKQRYAVNSV SFKPADTPLK IADYFKIDGV YRSGSIQYQP
401: TGGGIYLDTS VMQVDYRTFV EIIFENSEDI VQSWHLDGYS FWVVGMDGGQ WSPDSRNEYN LRDAVARCTV QVYPSSWTAI LIALDNVGMW NLRSEFWARQ
501: YLGQQLYLRV YTPSTSLRDE YPIPKNALLC GRASGRSTRP L

Arabidopsis Description

sks5Sks5 [Source:UniProtKB/TrEMBL;Acc:A0A178WJJ9]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.