Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 5
- vacuole 7
- plasma membrane 6
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
extracellular:
26583031
nucleus: 28394025 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID:
26583031
doi
Laboratory of Biochemistry, Wageningen University Wageningen, Netherlands., Molecular Plant Pathology, Faculty of Science, Swammerdam Institute for Life Sciences, University of Amsterdam Amsterdam, Netherlands., RNA Biology and Applied Bioinformatics Research Group and MAD: Dutch Genomics Service and Support Provider, Faculty of Science, Swammerdam Institute for Life Sciences, University of Amsterdam Amsterdam, Netherlands.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400075398 | Potato | extracellular | 97.24 | 97.24 |
| Solyc12g094470.1.1 | Tomato | nucleus | 78.68 | 78.82 |
| Solyc04g082140.2.1 | Tomato | extracellular | 77.21 | 77.78 |
| KRH60965 | Soybean | nucleus | 77.94 | 77.51 |
| Bra015781.1-P | Field mustard | extracellular | 76.65 | 77.08 |
| CDX87633 | Canola | extracellular | 76.65 | 77.08 |
| KRH51639 | Soybean | nucleus | 77.39 | 76.97 |
| CDX73238 | Canola | extracellular | 76.47 | 76.89 |
| KRH06000 | Soybean | endoplasmic reticulum | 76.1 | 76.53 |
| KRH17495 | Soybean | nucleus | 76.47 | 76.05 |
| CDY67479 | Canola | extracellular | 74.45 | 74.86 |
| CDY35790 | Canola | extracellular | 74.45 | 74.72 |
| Bra034943.1-P | Field mustard | extracellular | 74.45 | 74.72 |
| AT1G76160.1 | Thale cress | extracellular | 74.26 | 74.68 |
| Bra008241.1-P | Field mustard | extracellular | 75.18 | 74.64 |
| CDY55201 | Canola | extracellular | 75.18 | 74.5 |
| CDY68834 | Canola | extracellular, vacuole | 75.18 | 74.5 |
| AT1G41830.1 | Thale cress | extracellular | 73.9 | 74.17 |
| VIT_18s0001g00470.t01 | Wine grape | extracellular | 72.98 | 73.38 |
| Solyc01g111970.2.1 | Tomato | extracellular | 68.38 | 69.4 |
| AT1G21860.1 | Thale cress | extracellular | 67.65 | 68.4 |
| AT1G21850.1 | Thale cress | extracellular | 69.12 | 68.24 |
| Solyc07g052240.2.1 | Tomato | nucleus | 68.01 | 68.14 |
| Solyc07g052230.2.1 | Tomato | extracellular | 67.1 | 67.97 |
| CDY31468 | Canola | extracellular | 67.83 | 66.97 |
| Solyc02g080700.1.1 | Tomato | cytosol | 12.13 | 66.67 |
| Bra025818.1-P | Field mustard | extracellular | 66.91 | 66.06 |
| Solyc02g080670.2.1 | Tomato | nucleus | 64.34 | 63.87 |
| Solyc02g065170.2.1 | Tomato | nucleus | 57.35 | 57.88 |
| Solyc02g090360.2.1 | Tomato | extracellular | 57.17 | 57.81 |
| CDY29530 | Canola | plastid | 61.03 | 54.79 |
| Solyc05g055720.1.1 | Tomato | nucleus | 8.82 | 53.33 |
| Solyc01g056310.2.1 | Tomato | endoplasmic reticulum, extracellular, vacuole | 51.65 | 50.72 |
| Solyc11g008860.1.1 | Tomato | extracellular | 51.65 | 50.63 |
| Solyc05g055710.2.1 | Tomato | extracellular | 42.1 | 50.44 |
| Solyc01g005510.2.1 | Tomato | extracellular, plasma membrane, vacuole | 50.18 | 49.01 |
| Solyc03g063150.2.1 | Tomato | unclear | 50.0 | 48.92 |
| KRH57767 | Soybean | cytosol, peroxisome | 31.62 | 48.04 |
| Solyc04g081520.1.1 | Tomato | extracellular | 46.69 | 46.95 |
| Solyc05g055490.1.1 | Tomato | extracellular | 45.96 | 45.7 |
| Solyc08g079090.2.1 | Tomato | extracellular | 47.79 | 44.14 |
| Solyc09g055930.2.1 | Tomato | extracellular | 46.69 | 43.49 |
| Solyc03g083900.2.1 | Tomato | extracellular | 46.32 | 42.57 |
| Solyc11g008030.1.1 | Tomato | endoplasmic reticulum, extracellular, plasma membrane | 45.59 | 33.88 |
Protein Annotations
| Gene3D:2.60.40.420 | MapMan:50.1.10 | InterPro:Cu-oxidase | InterPro:Cu-oxidase_2 | InterPro:Cu-oxidase_3 | InterPro:CuRO_1_AAO-like |
| InterPro:Cupredoxin | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005507 | GO:GO:0005575 |
| GO:GO:0005618 | GO:GO:0005623 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009505 | GO:GO:0009506 |
| GO:GO:0016491 | GO:GO:0016722 | GO:GO:0030312 | GO:GO:0055114 | InterPro:IPR008972 | UniProt:K4DH18 |
| PFAM:PF00394 | PFAM:PF07731 | PFAM:PF07732 | PANTHER:PTHR11709 | PANTHER:PTHR11709:SF90 | SUPFAM:SSF49503 |
| SignalP:SignalP-noTM | EnsemblPlantsGene:Solyc12g094460.1 | EnsemblPlants:Solyc12g094460.1.1 | UniParc:UPI000276974A | SEG:seg | : |
Description
No Description!
Coordinates
chr12:-:64670717..64674380
Molecular Weight (calculated)
61032.5 Da
IEP (calculated)
9.405
GRAVY (calculated)
-0.279
Length
544 amino acids
Sequence
(BLAST)
(BLAST)
001: MLLKRELAVF LVALLVVNTI AESPYRFFEW NVTYGTIWPL GLPQKGILIN GQFPGPDIHS VTNDNVIINV FNNLDEEFLI SWNGIQNRRN SFEDGVWGTT
101: CPIPPGKNFT YILQVKDQIG SFYYFPSTAF HKASGGFGGF RILSRPGIPV PFDEPAGDFT VLIGDWYKSN HTYLKSVLDR NHKLPFVDAL HINGIGPQGP
201: NRATFTVDQG KTYRLRISNV GLEHSLNFRI EGHKMKLVEV EGTHTMQETY SSLDVHVGQS YSVLITADQT PKDYYIVVSN RFSSILLTTT GVLRYSNSNQ
301: GFTGPPPGGP TNEIGWSLTQ ARTIRTNLTA SGPRPNPQGS YHYGMINTTR TIRLANSAGQ VNGKQRYAVN SVSFVPTKSG TPLKLADYFK IGGFTPGNIP
401: DAPTGKGIYL DTSVLQTDYR TFIEIVFENK EGIVQSWHLN GYAFWVVGMD GGKWSPASRE QYNLRDAVSR ITTQVYPKSW TAIYIALDNV GMWNLRSEFW
501: ARQYLGQQLY MRVYTTSTSW RDEYPIPINA LLCGDVAGRH KRPL
101: CPIPPGKNFT YILQVKDQIG SFYYFPSTAF HKASGGFGGF RILSRPGIPV PFDEPAGDFT VLIGDWYKSN HTYLKSVLDR NHKLPFVDAL HINGIGPQGP
201: NRATFTVDQG KTYRLRISNV GLEHSLNFRI EGHKMKLVEV EGTHTMQETY SSLDVHVGQS YSVLITADQT PKDYYIVVSN RFSSILLTTT GVLRYSNSNQ
301: GFTGPPPGGP TNEIGWSLTQ ARTIRTNLTA SGPRPNPQGS YHYGMINTTR TIRLANSAGQ VNGKQRYAVN SVSFVPTKSG TPLKLADYFK IGGFTPGNIP
401: DAPTGKGIYL DTSVLQTDYR TFIEIVFENK EGIVQSWHLN GYAFWVVGMD GGKWSPASRE QYNLRDAVSR ITTQVYPKSW TAIYIALDNV GMWNLRSEFW
501: ARQYLGQQLY MRVYTTSTSW RDEYPIPINA LLCGDVAGRH KRPL
001: MAGSASFAAA LFIGLSLLFA VTAEDPYRFF EWNITYGDIY PLGVRQQGIL INGAFPGPDI HSVTNDNLII NVYNSLDEPF LLSWNGIQQR RNSFVDGVYG
101: TTCPIPPGKN YTYILQMKDQ IGSFYYFPSL GFHKAAGGFG GIRILSRPRI PVPFPDPAGD TTVLIGDWYK ANHTDLRAQL DNGKKLPLPD GILINGRSSG
201: ATLNVEQGKT YRFRISNVGL QDSLNFRIQD HKMKVVEVEG THTLQTTFSS LDVHVGQSYS VLVTADQTPR DYYVVVSSRF TSNVLTTTGI FRYSNSAGGV
301: SGPIPGGPTI QIDWSLNQAR AIRTNLSASG PRPNPQGSYH YGMINTTRTI RLASSAGQVD GKQRYAVNSV SFKPADTPLK IADYFKIDGV YRSGSIQYQP
401: TGGGIYLDTS VMQVDYRTFV EIIFENSEDI VQSWHLDGYS FWVVGMDGGQ WSPDSRNEYN LRDAVARCTV QVYPSSWTAI LIALDNVGMW NLRSEFWARQ
501: YLGQQLYLRV YTPSTSLRDE YPIPKNALLC GRASGRSTRP L
101: TTCPIPPGKN YTYILQMKDQ IGSFYYFPSL GFHKAAGGFG GIRILSRPRI PVPFPDPAGD TTVLIGDWYK ANHTDLRAQL DNGKKLPLPD GILINGRSSG
201: ATLNVEQGKT YRFRISNVGL QDSLNFRIQD HKMKVVEVEG THTLQTTFSS LDVHVGQSYS VLVTADQTPR DYYVVVSSRF TSNVLTTTGI FRYSNSAGGV
301: SGPIPGGPTI QIDWSLNQAR AIRTNLSASG PRPNPQGSYH YGMINTTRTI RLASSAGQVD GKQRYAVNSV SFKPADTPLK IADYFKIDGV YRSGSIQYQP
401: TGGGIYLDTS VMQVDYRTFV EIIFENSEDI VQSWHLDGYS FWVVGMDGGQ WSPDSRNEYN LRDAVARCTV QVYPSSWTAI LIALDNVGMW NLRSEFWARQ
501: YLGQQLYLRV YTPSTSLRDE YPIPKNALLC GRASGRSTRP L
Arabidopsis Description
sks5Sks5 [Source:UniProtKB/TrEMBL;Acc:A0A178WJJ9]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.