Factsheet for PGSC0003DMT400075398

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 6
plasma membrane 7
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g094460.1.1	Tomato	extracellular	97.24	97.24
PGSC0003DMT400075620	Potato	extracellular	79.6	79.74
PGSC0003DMT400025805	Potato	extracellular	77.57	78.15
KRH60965	Soybean	nucleus	77.94	77.51
KRH51639	Soybean	nucleus	77.39	76.97
Bra015781.1-P	Field mustard	extracellular	75.92	76.34
CDX87633	Canola	extracellular	75.92	76.34
CDX73238	Canola	extracellular	75.74	76.16
KRH06000	Soybean	endoplasmic reticulum	75.74	76.16
KRH17495	Soybean	nucleus	76.1	75.69
CDY67479	Canola	extracellular	73.71	74.12
Bra034943.1-P	Field mustard	extracellular	73.71	73.99
CDY35790	Canola	extracellular	73.71	73.99
AT1G76160.1	Thale cress	extracellular	73.53	73.94
Bra008241.1-P	Field mustard	extracellular	74.26	73.72
AT1G41830.1	Thale cress	extracellular	73.35	73.62
CDY55201	Canola	extracellular	74.26	73.59
CDY68834	Canola	extracellular, vacuole	74.26	73.59
VIT_18s0001g00470.t01	Wine grape	extracellular	72.98	73.38
PGSC0003DMT400048000	Potato	extracellular	68.93	71.84
AT1G21860.1	Thale cress	extracellular	67.28	68.03
AT1G21850.1	Thale cress	extracellular	68.75	67.88
PGSC0003DMT400074510	Potato	extracellular	66.91	67.28
PGSC0003DMT400074506	Potato	cytosol, extracellular, nucleus	59.01	66.88
CDY31468	Canola	extracellular	67.46	66.61
Bra025818.1-P	Field mustard	extracellular	66.36	65.52
PGSC0003DMT400042483	Potato	extracellular	64.15	63.8
PGSC0003DMT400002004	Potato	extracellular	57.17	57.7
PGSC0003DMT400025973	Potato	extracellular	56.8	54.31
CDY29530	Canola	plastid	60.48	54.29
PGSC0003DMT400060352	Potato	extracellular	51.65	50.91
PGSC0003DMT400016672	Potato	endoplasmic reticulum	51.47	50.54
PGSC0003DMT400041845	Potato	extracellular, plasma membrane, vacuole	51.84	50.54
PGSC0003DMT400010905	Potato	extracellular, plasma membrane	51.47	49.38
PGSC0003DMT400002554	Potato	endoplasmic reticulum, extracellular, golgi	50.18	49.1
PGSC0003DMT400082031	Potato	extracellular, plasma membrane, vacuole	49.82	48.65
KRH57767	Soybean	cytosol, peroxisome	30.88	46.93
PGSC0003DMT400025541	Potato	extracellular	37.5	46.36
PGSC0003DMT400074313	Potato	extracellular	47.43	44.25
PGSC0003DMT400035984	Potato	plasma membrane	46.88	43.0
PGSC0003DMT400012216	Potato	extracellular, plasma membrane, vacuole	47.06	42.81

Protein Annotations

EntrezGene:102584139	Gene3D:2.60.40.420	MapMan:50.1.10	InterPro:Cu-oxidase	InterPro:Cu-oxidase_2	InterPro:Cu-oxidase_3
InterPro:CuRO_1_AAO-like	InterPro:Cupredoxin	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005507
GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	InterPro:IPR008972	UniProt:M1CV37
PFAM:PF00394	PFAM:PF07731	PFAM:PF07732	EnsemblPlantsGene:PGSC0003DMG400029325	PGSC:PGSC0003DMG400029325	EnsemblPlants:PGSC0003DMT400075398
PANTHER:PTHR11709	PANTHER:PTHR11709:SF90	SUPFAM:SSF49503	SignalP:SignalP-noTM	UniParc:UPI00029487D9	RefSeq:XP_006342555.1
SEG:seg	:	:	:	:	:

Description

PS60 protein [Source:PGSC_GENE;Acc:PGSC0003DMG400029325]

Coordinates

chr12:-:57274756..57278449

Molecular Weight (calculated)

60829.1 Da

IEP (calculated)

8.479

GRAVY (calculated)

-0.260

Length

544 amino acids

Sequence
(BLAST)

001: MPLKGELAVF LVALLVVNTI AESPYRFFEW NVTYGTIWPL GLPQKGILIN GQFPGPDIHS VTNDNVIINV FNNLDEDFLI SWNGIQNRRN SFEDGVWGTT
101: CPIPPGKNFT YILQVKDQIG SFYYFPSTAF HKASGGFGGF RILSRPGIPV PFDEPAGDFT VLIGDWYKSN HTYLKSILDR NHKLPFVDAL HINGIGPQGP
201: NRASFTVDQG KTYRLRISNV GLEHSLNFRI EGHKMKLVEV EGTHTMQETY SSLDVHVGQS YSVLITADQT PKDYYIVVSN RFSSILLTTT GVLHYSNSNQ
301: EFTGPPPGGP TIEIGWSLTQ ARSIRTNLTA SGPRPNPQGS YHYGMINTTR TIRLANSAGQ VNGKQRYAVN SVSFVPTKSG TPLKLADYFD IGGFTPGNIP
401: DAPTSKGIYL DTSVLQTDYR TFIEIVFENK EGIVQSWHLN GYAFWVVGMD GGNWSPASKD QYNLRDAVSR ITTQVYPKSW TAIYIALDNV GMWNLRSEFW
501: ARQYLGQQLY MRVYTTSTSL RDEYPIPINA LLCGDVAGRH KRPL

Best Arabidopsis Sequence Match ( AT1G76160.1 )
(BLAST)

001: MAGSASFAAA LFIGLSLLFA VTAEDPYRFF EWNITYGDIY PLGVRQQGIL INGAFPGPDI HSVTNDNLII NVYNSLDEPF LLSWNGIQQR RNSFVDGVYG
101: TTCPIPPGKN YTYILQMKDQ IGSFYYFPSL GFHKAAGGFG GIRILSRPRI PVPFPDPAGD TTVLIGDWYK ANHTDLRAQL DNGKKLPLPD GILINGRSSG
201: ATLNVEQGKT YRFRISNVGL QDSLNFRIQD HKMKVVEVEG THTLQTTFSS LDVHVGQSYS VLVTADQTPR DYYVVVSSRF TSNVLTTTGI FRYSNSAGGV
301: SGPIPGGPTI QIDWSLNQAR AIRTNLSASG PRPNPQGSYH YGMINTTRTI RLASSAGQVD GKQRYAVNSV SFKPADTPLK IADYFKIDGV YRSGSIQYQP
401: TGGGIYLDTS VMQVDYRTFV EIIFENSEDI VQSWHLDGYS FWVVGMDGGQ WSPDSRNEYN LRDAVARCTV QVYPSSWTAI LIALDNVGMW NLRSEFWARQ
501: YLGQQLYLRV YTPSTSLRDE YPIPKNALLC GRASGRSTRP L

Arabidopsis Description

sks5Sks5 [Source:UniProtKB/TrEMBL;Acc:A0A178WJJ9]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.