Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 5
- vacuole 7
- plasma membrane 6
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
extracellular:
22364583
nucleus: 28394025 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400025973 | Potato | extracellular | 98.14 | 92.79 |
| Solyc02g065170.2.1 | Tomato | nucleus | 84.57 | 84.42 |
| KRH76937 | Soybean | endoplasmic reticulum | 76.39 | 76.11 |
| VIT_00s0253g00040.t01 | Wine grape | extracellular | 74.72 | 75.0 |
| KRH28523 | Soybean | extracellular | 74.54 | 74.67 |
| KRH04707 | Soybean | endoplasmic reticulum | 74.35 | 73.94 |
| KRH57764 | Soybean | cytosol, extracellular, plastid | 58.36 | 73.88 |
| Bra037137.1-P | Field mustard | extracellular | 71.93 | 71.53 |
| CDY18626 | Canola | extracellular | 71.93 | 71.53 |
| CDY68812 | Canola | cytosol, peroxisome | 59.29 | 71.52 |
| CDX81353 | Canola | extracellular | 71.56 | 71.16 |
| GSMUA_Achr6P34670_001 | Banana | extracellular | 70.26 | 71.05 |
| Bra036800.1-P | Field mustard | extracellular | 70.45 | 70.06 |
| CDY43557 | Canola | extracellular | 70.45 | 70.06 |
| Bra012117.1-P | Field mustard | extracellular, golgi, vacuole | 70.07 | 69.17 |
| CDY01453 | Canola | extracellular, golgi | 69.89 | 68.99 |
| AT5G66920.1 | Thale cress | extracellular, plasma membrane, vacuole | 69.89 | 68.86 |
| CDY12788 | Canola | extracellular | 68.77 | 68.14 |
| GSMUA_Achr10P... | Banana | extracellular | 68.4 | 67.15 |
| HORVU2Hr1G062590.3 | Barley | extracellular | 63.57 | 63.33 |
| Os07t0119400-01 | Rice | extracellular | 64.13 | 63.3 |
| TraesCS2D01G259100.1 | Wheat | endoplasmic reticulum, extracellular, mitochondrion | 63.38 | 62.68 |
| TraesCS2A01G264900.1 | Wheat | extracellular | 63.38 | 62.68 |
| TraesCS2B01G277200.1 | Wheat | extracellular | 63.57 | 62.52 |
| OQU88350 | Sorghum | extracellular | 61.9 | 60.22 |
| Solyc02g080670.2.1 | Tomato | nucleus | 60.97 | 59.85 |
| Solyc07g052230.2.1 | Tomato | extracellular | 57.99 | 58.1 |
| Solyc07g052240.2.1 | Tomato | nucleus | 58.36 | 57.83 |
| Zm00001d018696_P001 | Maize | extracellular | 61.9 | 57.22 |
| Solyc12g094460.1.1 | Tomato | extracellular | 57.81 | 57.17 |
| Solyc01g111970.2.1 | Tomato | extracellular | 56.88 | 57.09 |
| Solyc04g082140.2.1 | Tomato | extracellular | 57.25 | 57.04 |
| Solyc12g094470.1.1 | Tomato | nucleus | 56.13 | 55.62 |
| Solyc02g080700.1.1 | Tomato | cytosol | 10.22 | 55.56 |
| Solyc03g063150.2.1 | Tomato | unclear | 51.67 | 50.0 |
| Solyc01g005510.2.1 | Tomato | extracellular, plasma membrane, vacuole | 51.3 | 49.55 |
| Solyc11g008860.1.1 | Tomato | extracellular | 50.93 | 49.37 |
| Solyc05g055720.1.1 | Tomato | nucleus | 8.18 | 48.89 |
| Solyc05g055710.2.1 | Tomato | extracellular | 40.89 | 48.46 |
| Solyc05g055490.1.1 | Tomato | extracellular | 48.51 | 47.71 |
| Solyc01g056310.2.1 | Tomato | endoplasmic reticulum, extracellular, vacuole | 48.88 | 47.47 |
| Solyc09g055930.2.1 | Tomato | extracellular | 50.19 | 46.23 |
| Solyc04g081520.1.1 | Tomato | extracellular | 44.61 | 44.36 |
| Solyc08g079090.2.1 | Tomato | extracellular | 46.28 | 42.27 |
| Solyc03g083900.2.1 | Tomato | extracellular | 46.1 | 41.89 |
| Solyc11g008030.1.1 | Tomato | endoplasmic reticulum, extracellular, plasma membrane | 47.77 | 35.11 |
Protein Annotations
| Gene3D:2.60.40.420 | MapMan:50.1.10 | InterPro:Cu-oxidase | InterPro:Cu-oxidase_2 | InterPro:Cu-oxidase_3 | InterPro:CuRO_1_AAO-like |
| InterPro:Cupredoxin | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005507 | GO:GO:0005575 |
| GO:GO:0005618 | GO:GO:0005623 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009505 | GO:GO:0009506 |
| GO:GO:0016491 | GO:GO:0016722 | GO:GO:0030312 | GO:GO:0055114 | InterPro:IPR008972 | UniProt:K4BCI5 |
| PFAM:PF00394 | PFAM:PF07731 | PFAM:PF07732 | PANTHER:PTHR11709 | PANTHER:PTHR11709:SF26 | SUPFAM:SSF49503 |
| SignalP:SignalP-noTM | EnsemblPlantsGene:Solyc02g090360.2 | EnsemblPlants:Solyc02g090360.2.1 | TMHMM:TMhelix | UniParc:UPI000276923D | : |
Description
No Description!
Coordinates
chr2:-:51918053..51921074
Molecular Weight (calculated)
60384.9 Da
IEP (calculated)
9.551
GRAVY (calculated)
-0.230
Length
538 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNVALFHLI CGIFIFWSVS LVKAEDTYKY FTWTATYGTL YPLGVPQQVI LINGQFPGPR LDLVTNDNVI LNLINKLDEP LLLTWNGIKQ RKNSWQDGVL
101: GTNCPIPINS NYTYKFQTKD QIGSYTYFPS TQLHRAVGGF GALNVYARSV IPVPYAKPAG DFSLLIGDWY KSSHKVLRQI LDSGRSLPYP NDLLINGQKQ
201: STFSGDQGKT YMFRISNVGL KNSINFRIQG HKMRVVEIEG SHVLQNFYDS LDVHVGQSMS VLVTLDQPPK DYYIVASTRF SRISFTATSV LHYTNSQTPV
301: SGPVPPAPTG QMHWSMLQAR TFRWNLTSNA ARPNPQGSFH YGKITISRTF VMANSAPLIN GKLRYAVNSV SYVNPDTPLK LADHFNIPGV FNLNSIQAYP
401: SGGSPNLGTA VFPTSHHDFI EIVFQNDEAT MQSWHLDGYD FWVVGFGSGK WTQASRNKYN LVDALTRHTT QVYPKSWTAI LVSLDNQGMW NLRSAMWDRQ
501: YLGQQVYLRV YDPTPSLANE YDIPTNALLC GKAAGRHT
101: GTNCPIPINS NYTYKFQTKD QIGSYTYFPS TQLHRAVGGF GALNVYARSV IPVPYAKPAG DFSLLIGDWY KSSHKVLRQI LDSGRSLPYP NDLLINGQKQ
201: STFSGDQGKT YMFRISNVGL KNSINFRIQG HKMRVVEIEG SHVLQNFYDS LDVHVGQSMS VLVTLDQPPK DYYIVASTRF SRISFTATSV LHYTNSQTPV
301: SGPVPPAPTG QMHWSMLQAR TFRWNLTSNA ARPNPQGSFH YGKITISRTF VMANSAPLIN GKLRYAVNSV SYVNPDTPLK LADHFNIPGV FNLNSIQAYP
401: SGGSPNLGTA VFPTSHHDFI EIVFQNDEAT MQSWHLDGYD FWVVGFGSGK WTQASRNKYN LVDALTRHTT QVYPKSWTAI LVSLDNQGMW NLRSAMWDRQ
501: YLGQQVYLRV YDPTPSLANE YDIPTNALLC GKAAGRHT
001: MKMASRKTTS LLNHLLLLGA LTLLSSLVIV KGESPYKFYT WTVTYGIISP LGVPQQVILI NGQFPGPKLE VVTNDNIILN LINKLDQPFL LTWNGIKQRK
101: NSWQDGVLGT NCPIQPNSNF TYKFQTKDQI GTFNYFPSTA FHKAAGGFGA INVYARPGIP IPYPLPTADF TLLVGDWFKT NHKTLQQRLD SGGVLPFPDG
201: MLINGQTQST FSGDQGKTYM LRISNVGLSS TFNFRIQGHT MKVVEVEGSH VIQTDYDSLD IHVGQSLAVL VTLNQSPKDY YIVASTRFIR SKLSVMGLLR
301: YSNSRVPASG DPPALPPGEL VWSMRQARTF RWNLTANAAR PNPQGSFHYG MISPTKTFVF SNSAPLINGK QRYAVNGVSY VKSETPLKLA DHFGISGVFS
401: TNAIQSVPSN SPPTVATSVV QTSHHDFLEI VFQNNEKSMQ SWHLDGYDFW VVGFGSGQWT PAKRSLHNLV DALTRHTTQV YPESWTTILV SLDNQGMWNM
501: RSAIWERQYS GQQFYLKVWN SVQSLANEYN PPDNLQLCGK AVGRHV
101: NSWQDGVLGT NCPIQPNSNF TYKFQTKDQI GTFNYFPSTA FHKAAGGFGA INVYARPGIP IPYPLPTADF TLLVGDWFKT NHKTLQQRLD SGGVLPFPDG
201: MLINGQTQST FSGDQGKTYM LRISNVGLSS TFNFRIQGHT MKVVEVEGSH VIQTDYDSLD IHVGQSLAVL VTLNQSPKDY YIVASTRFIR SKLSVMGLLR
301: YSNSRVPASG DPPALPPGEL VWSMRQARTF RWNLTANAAR PNPQGSFHYG MISPTKTFVF SNSAPLINGK QRYAVNGVSY VKSETPLKLA DHFGISGVFS
401: TNAIQSVPSN SPPTVATSVV QTSHHDFLEI VFQNNEKSMQ SWHLDGYDFW VVGFGSGQWT PAKRSLHNLV DALTRHTTQV YPESWTTILV SLDNQGMWNM
501: RSAIWERQYS GQQFYLKVWN SVQSLANEYN PPDNLQLCGK AVGRHV
Arabidopsis Description
sks17Sks17 [Source:UniProtKB/TrEMBL;Acc:A0A178UJS3]
SUBAcon: [plasma membrane,extracellular,vacuole]
SUBAcon: [plasma membrane,extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.