Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, extracellular
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 5
- golgi 5
- extracellular 6
- vacuole 5
- plasma membrane 6
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY43352 | Canola | extracellular, plasma membrane | 88.2 | 95.48 |
| CDY23597 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 95.64 | 95.47 |
| CDY24188 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 95.28 | 95.45 |
| CDY43994 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 95.46 | 95.29 |
| CDX82540 | Canola | extracellular | 95.28 | 95.28 |
| CDX75708 | Canola | extracellular | 95.28 | 95.28 |
| Bra034679.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane | 95.28 | 95.11 |
| Bra001504.1-P | Field mustard | extracellular | 94.92 | 94.92 |
| Bra039389.1-P | Field mustard | plasma membrane | 89.29 | 94.62 |
| AT1G55560.1 | Thale cress | extracellular | 88.38 | 88.71 |
| AT1G55570.1 | Thale cress | extracellular, plasma membrane | 77.13 | 76.58 |
| AT3G13390.1 | Thale cress | extracellular, plasma membrane, vacuole | 76.22 | 75.81 |
| KRH31599 | Soybean | extracellular | 72.23 | 72.1 |
| VIT_00s1643g00010.t01 | Wine grape | vacuole | 70.05 | 70.18 |
| VIT_00s1309g00010.t01 | Wine grape | vacuole | 70.05 | 70.18 |
| GSMUA_Achr11P... | Banana | vacuole | 66.97 | 70.02 |
| GSMUA_Achr5P27810_001 | Banana | extracellular | 66.42 | 69.45 |
| GSMUA_Achr8P01580_001 | Banana | extracellular | 64.97 | 69.38 |
| KRG89471 | Soybean | mitochondrion | 69.69 | 68.94 |
| KRH50513 | Soybean | vacuole | 68.78 | 68.91 |
| GSMUA_Achr9P04930_001 | Banana | endoplasmic reticulum, extracellular, plasma membrane | 65.34 | 68.7 |
| GSMUA_Achr8P09380_001 | Banana | extracellular | 64.25 | 67.43 |
| KRH50514 | Soybean | endoplasmic reticulum, extracellular, vacuole | 67.51 | 67.39 |
| GSMUA_AchrUn_... | Banana | extracellular | 63.7 | 66.6 |
| GSMUA_Achr11P... | Banana | extracellular | 63.52 | 66.16 |
| Solyc05g055720.1.1 | Tomato | nucleus | 10.71 | 65.56 |
| GSMUA_Achr10P... | Banana | extracellular, golgi | 66.42 | 64.89 |
| PGSC0003DMT400016672 | Potato | endoplasmic reticulum | 64.97 | 64.62 |
| PGSC0003DMT400002554 | Potato | endoplasmic reticulum, extracellular, golgi | 64.79 | 64.21 |
| Solyc01g056310.2.1 | Tomato | endoplasmic reticulum, extracellular, vacuole | 64.43 | 64.08 |
| Solyc03g063150.2.1 | Tomato | unclear | 64.25 | 63.67 |
| PGSC0003DMT400041845 | Potato | extracellular, plasma membrane, vacuole | 64.43 | 63.62 |
| Solyc11g008860.1.1 | Tomato | extracellular | 63.7 | 63.24 |
| GSMUA_Achr9P16870_001 | Banana | extracellular, plasma membrane, vacuole | 63.52 | 62.84 |
| Solyc01g005510.2.1 | Tomato | extracellular, plasma membrane, vacuole | 62.79 | 62.12 |
| PGSC0003DMT400082031 | Potato | extracellular, plasma membrane, vacuole | 62.61 | 61.94 |
| PGSC0003DMT400010905 | Potato | extracellular, plasma membrane | 63.52 | 61.73 |
| TraesCS1D01G303600.1 | Wheat | extracellular | 62.43 | 61.54 |
| TraesCS1B01G314600.1 | Wheat | plasma membrane | 62.25 | 61.36 |
| TraesCS1A01G304100.1 | Wheat | extracellular, golgi, plasma membrane | 62.25 | 61.36 |
| HORVU1Hr1G069130.1 | Barley | extracellular, golgi, plasma membrane | 62.25 | 61.25 |
| PGSC0003DMT400060352 | Potato | extracellular | 61.34 | 61.23 |
| Solyc05g055710.2.1 | Tomato | extracellular | 49.73 | 60.35 |
| EES01652 | Sorghum | extracellular, golgi, vacuole | 60.25 | 59.5 |
| Os01t0816700-01 | Rice | plasma membrane | 59.71 | 59.49 |
| Zm00001d043090_P001 | Maize | vacuole | 60.07 | 59.43 |
| Zm00001d012524_P001 | Maize | vacuole | 59.89 | 59.03 |
| EES19711 | Sorghum | extracellular | 59.89 | 59.03 |
| Zm00001d038521_P001 | Maize | extracellular, plasma membrane, vacuole | 59.71 | 58.86 |
| HORVU4Hr1G048550.1 | Barley | cytosol, extracellular | 6.72 | 58.73 |
| Zm00001d010630_P003 | Maize | extracellular, golgi, vacuole | 60.07 | 58.07 |
| HORVU3Hr1G080360.1 | Barley | extracellular, golgi, vacuole | 58.62 | 57.99 |
| TraesCS3D01G333700.1 | Wheat | extracellular, golgi, vacuole | 58.26 | 57.73 |
| GSMUA_Achr3P09610_001 | Banana | plastid | 63.88 | 57.61 |
| TraesCS3A01G340200.1 | Wheat | extracellular, golgi, vacuole | 57.89 | 57.58 |
| TraesCS3B01G371800.1 | Wheat | extracellular, golgi, vacuole | 58.08 | 57.55 |
| GSMUA_Achr5P07530_001 | Banana | extracellular, golgi, vacuole | 62.98 | 55.52 |
| AT1G41830.1 | Thale cress | extracellular | 53.36 | 54.24 |
| AT5G66920.1 | Thale cress | extracellular, plasma membrane, vacuole | 52.81 | 53.3 |
| AT1G21860.1 | Thale cress | extracellular | 51.91 | 53.16 |
| AT1G76160.1 | Thale cress | extracellular | 52.09 | 53.05 |
| AT4G22010.1 | Thale cress | extracellular | 51.36 | 52.31 |
| AT2G23630.2 | Thale cress | extracellular | 51.0 | 51.47 |
| AT4G38420.1 | Thale cress | extracellular | 51.0 | 51.18 |
| AT1G21850.1 | Thale cress | extracellular | 51.0 | 51.0 |
| AT4G37160.1 | Thale cress | extracellular | 48.64 | 49.54 |
| AT4G28090.1 | Thale cress | extracellular | 47.37 | 47.71 |
| AT1G75790.1 | Thale cress | extracellular | 45.92 | 46.42 |
| Zm00001d047156_P002 | Maize | cytosol | 16.52 | 45.05 |
| AT4G12420.2 | Thale cress | extracellular, plasma membrane | 46.64 | 43.78 |
| AT4G25240.1 | Thale cress | plasma membrane | 45.55 | 42.61 |
| AT5G51480.1 | Thale cress | extracellular, plasma membrane | 45.37 | 42.23 |
| AT5G48450.1 | Thale cress | extracellular | 47.55 | 42.19 |
| Zm00001d037444_P001 | Maize | mitochondrion | 19.24 | 39.55 |
| Zm00001d004806_P001 | Maize | plastid | 5.08 | 32.94 |
| Os05t0485800-00 | Rice | plasma membrane | 38.48 | 31.13 |
Protein Annotations
| Gene3D:2.60.40.420 | MapMan:50.1.10 | EntrezGene:820540 | ProteinID:AEE75342.1 | ProteinID:ANM65441.1 | ArrayExpress:AT3G13400 |
| EnsemblPlantsGene:AT3G13400 | RefSeq:AT3G13400 | TAIR:AT3G13400 | RefSeq:AT3G13400-TAIR-G | EnsemblPlants:AT3G13400.1 | TAIR:AT3G13400.1 |
| EMBL:AY056409 | EMBL:AY072225 | EMBL:AY096473 | Unigene:At.8258 | ProteinID:BAB01745.1 | InterPro:Cu-oxidase |
| InterPro:Cu-oxidase_2 | InterPro:Cu-oxidase_3 | InterPro:CuRO_2_AO-like | InterPro:Cupredoxin | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005488 | GO:GO:0005507 | GO:GO:0005575 | GO:GO:0005618 | GO:GO:0005623 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009505 | GO:GO:0009506 | GO:GO:0016491 | GO:GO:0016722 | GO:GO:0030312 |
| GO:GO:0055114 | InterPro:IPR008972 | RefSeq:NP_001319540.1 | RefSeq:NP_187948.1 | PFAM:PF00394 | PFAM:PF07731 |
| PFAM:PF07732 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001185 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0009009 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 |
| PANTHER:PTHR11709 | PANTHER:PTHR11709:SF27 | UniProt:Q9LJF1 | SUPFAM:SSF49503 | SignalP:SignalP-noTM | UniParc:UPI00000486FD |
| SEG:seg | Symbol:sks13 | : | : | : | : |
Description
sks13AT3g13400/MRP15_3 [Source:UniProtKB/TrEMBL;Acc:Q9LJF1]
Coordinates
chr3:+:4354923..4357428
Molecular Weight (calculated)
61657.4 Da
IEP (calculated)
9.479
GRAVY (calculated)
-0.259
Length
551 amino acids
Sequence
(BLAST)
(BLAST)
001: MQGGRLLTVL VCLASTVALV SAGDPYFYYT WNVTYGTAAP LGIPQQVILI NGQFPGPNLN STSNNNVVIN VFNNLDEPFL LTWSGLQHRK NSWQDGVTGT
101: SCPIPAGTNF TYHFQPKDQI GSYFYYPSTA LHRFAGGFGG LRVNSRLLIP VPYADPEDDR TILINDWYAK SHTALKNFLD SGRTLGSPDG VLINGKSGKL
201: GGNNAPLFTM KPGKTYKYRI CNVGFKSTLN FRIQGHKMKL VEMEGSHVLQ NDYDSLDVHV GQCFAVLVTA DQVAKNYYMV ASTRFLKKEV STVGVMSYEG
301: SNVQASSDIP KAPVGWAWSL NQFRSFRWNL TASAARPNPQ GSYHYGKINI TRTIKLANTK NLVNGKVRFG FNGVSHVDTE TPLKLAEYFG MSEKVFKYNV
401: IKDEPAAKIT TLTVEPNVLN ITFRTFVEVV FENHEKSMQS FHLDGYSFFA VASEPGRWTP EKRNNYNLLD AVSRHTVQVY PKSWSAILLT FDNAGMWNIR
501: SENWERRYLG QQLYVSVLSP EKSLRDEYNI PLNTNLCGIV KGLPLPTPYT I
101: SCPIPAGTNF TYHFQPKDQI GSYFYYPSTA LHRFAGGFGG LRVNSRLLIP VPYADPEDDR TILINDWYAK SHTALKNFLD SGRTLGSPDG VLINGKSGKL
201: GGNNAPLFTM KPGKTYKYRI CNVGFKSTLN FRIQGHKMKL VEMEGSHVLQ NDYDSLDVHV GQCFAVLVTA DQVAKNYYMV ASTRFLKKEV STVGVMSYEG
301: SNVQASSDIP KAPVGWAWSL NQFRSFRWNL TASAARPNPQ GSYHYGKINI TRTIKLANTK NLVNGKVRFG FNGVSHVDTE TPLKLAEYFG MSEKVFKYNV
401: IKDEPAAKIT TLTVEPNVLN ITFRTFVEVV FENHEKSMQS FHLDGYSFFA VASEPGRWTP EKRNNYNLLD AVSRHTVQVY PKSWSAILLT FDNAGMWNIR
501: SENWERRYLG QQLYVSVLSP EKSLRDEYNI PLNTNLCGIV KGLPLPTPYT I
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.