Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 5
- golgi 5
- extracellular 7
- vacuole 5
- plasma membrane 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra008223.1-P | Field mustard | cytosol, extracellular, nucleus | 71.56 | 79.11 |
| CDY39058 | Canola | extracellular | 78.72 | 78.72 |
| CDY13534 | Canola | extracellular | 78.35 | 78.35 |
| PGSC0003DMT400025541 | Potato | extracellular | 49.17 | 60.91 |
| Solyc04g081520.1.1 | Tomato | extracellular | 58.72 | 59.15 |
| GSMUA_Achr4P29540_001 | Banana | endoplasmic reticulum, extracellular, plasma membrane | 53.95 | 52.88 |
| TraesCS3A01G170900.1 | Wheat | extracellular | 48.81 | 48.9 |
| HORVU3Hr1G033220.2 | Barley | extracellular | 49.91 | 48.75 |
| AT4G22010.1 | Thale cress | extracellular | 47.89 | 48.24 |
| TraesCS3B01G195700.1 | Wheat | extracellular | 40.0 | 48.23 |
| TraesCS3D01G171100.1 | Wheat | mitochondrion | 49.17 | 47.77 |
| AT1G76160.1 | Thale cress | extracellular | 47.16 | 47.5 |
| AT1G41830.1 | Thale cress | extracellular | 46.97 | 47.23 |
| AT1G21860.1 | Thale cress | extracellular | 46.24 | 46.84 |
| AT1G21850.1 | Thale cress | extracellular | 47.34 | 46.82 |
| AT3G13400.1 | Thale cress | extracellular, plasma membrane | 46.42 | 45.92 |
| AT4G38420.1 | Thale cress | extracellular | 46.05 | 45.72 |
| AT5G66920.1 | Thale cress | extracellular, plasma membrane, vacuole | 45.5 | 45.42 |
| AT4G37160.1 | Thale cress | extracellular | 44.95 | 45.29 |
| AT1G55560.1 | Thale cress | extracellular | 45.5 | 45.17 |
| AT2G23630.2 | Thale cress | extracellular | 44.95 | 44.87 |
| AT4G28090.1 | Thale cress | extracellular | 44.95 | 44.79 |
| AT3G13390.1 | Thale cress | extracellular, plasma membrane, vacuole | 45.5 | 44.77 |
| AT1G55570.1 | Thale cress | extracellular, plasma membrane | 45.5 | 44.68 |
| AT4G25240.1 | Thale cress | plasma membrane | 46.24 | 42.78 |
| AT4G12420.2 | Thale cress | extracellular, plasma membrane | 44.77 | 41.57 |
| AT5G51480.1 | Thale cress | extracellular, plasma membrane | 44.77 | 41.22 |
| AT5G48450.1 | Thale cress | extracellular | 45.32 | 39.77 |
Protein Annotations
| Gene3D:2.60.40.420 | MapMan:50.1.10 | EntrezGene:843912 | UniProt:A0A178WEI7 | ProteinID:AEE35759.1 | ArrayExpress:AT1G75790 |
| EnsemblPlantsGene:AT1G75790 | RefSeq:AT1G75790 | TAIR:AT1G75790 | RefSeq:AT1G75790-TAIR-G | EnsemblPlants:AT1G75790.1 | TAIR:AT1G75790.1 |
| Unigene:At.34730 | InterPro:Cu-oxidase | InterPro:Cu-oxidase_2 | InterPro:Cu-oxidase_3 | InterPro:CuRO_2_AO-like | InterPro:CuRO_3_AO-like |
| InterPro:Cupredoxin | EMBL:DQ446433 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005507 |
| GO:GO:0005575 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016491 |
| GO:GO:0016722 | GO:GO:0055114 | InterPro:IPR008972 | RefSeq:NP_177707.1 | ProteinID:OAP16829.1 | PFAM:PF00394 |
| PFAM:PF07731 | PFAM:PF07732 | PO:PO:0000084 | PO:PO:0001078 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0009010 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0025022 | PANTHER:PTHR11709 |
| PANTHER:PTHR11709:SF115 | UniProt:Q1PFD0 | SUPFAM:SSF49503 | SignalP:SignalP-TM | TMHMM:TMhelix | UniParc:UPI000004848B |
| SEG:seg | Symbol:sks18 | : | : | : | : |
Description
sks18Multi-copper oxidase type I family protein [Source:UniProtKB/TrEMBL;Acc:Q1PFD0]
Coordinates
chr1:-:28454781..28457528
Molecular Weight (calculated)
61384.6 Da
IEP (calculated)
6.590
GRAVY (calculated)
-0.068
Length
545 amino acids
Sequence
(BLAST)
(BLAST)
001: MRHVFVEVLV LISLVILELS YAFAPISSYQ WVVSYSQRFI LGGNKQVIVI NDMFPGPILN ATANDIIVVN IFNNLPEPFL MTWNGLQLRK NSWQDGVRGT
101: NCPILPGTNW TYRFQVKDQI GSYFYFPTLL LQKAAGGYGA IRIYPPELVP VPFPKPDEEY DILIGDWFYL DHTVMRASLD AGHSLPNPDG ILFNGRGPEE
201: TFFAFEPGKT YRLRISNVGL KTCLNFRIQD HDMLLVETEG TYVQKRVYSS LDIHVGQSYS ILVTAKTDPV GIYRSYYIFA TARFTDSYLG GIALIRYPGS
301: PLDPVGQGPL APALQDFGSS VEQALSIRMD LNVGAARSNP QGSYHYGRIN VTRTIILHND VMLSSGKLRY TINGVSFVYP ETPLKLVDHF QLNDTIIPGM
401: FPVYPSNKTP TLGTSVVDIH YKDFIHIVFQ NPLFGLESYH IDGYNFFVVG YGFGAWSESK KAGYNLVDAV SRSTVQVYPY SWTAILIAMD NQGMWNVRSQ
501: KAEQWYLGQE LYMRVKGEGE EDPSTIPVRD ENPIPGNVIR CGKVR
101: NCPILPGTNW TYRFQVKDQI GSYFYFPTLL LQKAAGGYGA IRIYPPELVP VPFPKPDEEY DILIGDWFYL DHTVMRASLD AGHSLPNPDG ILFNGRGPEE
201: TFFAFEPGKT YRLRISNVGL KTCLNFRIQD HDMLLVETEG TYVQKRVYSS LDIHVGQSYS ILVTAKTDPV GIYRSYYIFA TARFTDSYLG GIALIRYPGS
301: PLDPVGQGPL APALQDFGSS VEQALSIRMD LNVGAARSNP QGSYHYGRIN VTRTIILHND VMLSSGKLRY TINGVSFVYP ETPLKLVDHF QLNDTIIPGM
401: FPVYPSNKTP TLGTSVVDIH YKDFIHIVFQ NPLFGLESYH IDGYNFFVVG YGFGAWSESK KAGYNLVDAV SRSTVQVYPY SWTAILIAMD NQGMWNVRSQ
501: KAEQWYLGQE LYMRVKGEGE EDPSTIPVRD ENPIPGNVIR CGKVR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.