Factsheet for Solyc04g005810.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
peroxisome 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g006830.2.1	Tomato	cytosol, plastid	72.93	71.85
Solyc05g006870.2.1	Tomato	cytosol	69.17	68.15
Solyc05g006860.2.1	Tomato	cytosol	69.17	68.15
VIT_01s0026g01460.t01	Wine grape	cytosol	55.64	61.16
Solyc05g006850.2.1	Tomato	cytosol	60.9	60.0
KRH74753	Soybean	cytosol	53.38	57.26
KRH74754	Soybean	cytosol	53.38	56.35
KRH69383	Soybean	cytosol	51.88	54.33
KRH69384	Soybean	cytosol	51.88	53.91
KRG99185	Soybean	cytosol, plastid	48.87	53.72
KRH45834	Soybean	cytosol, plastid	48.12	52.89
Solyc04g080850.2.1	Tomato	extracellular	44.36	47.97
GSMUA_Achr2P17710_001	Banana	cytosol	43.61	45.67
EER90722	Sorghum	cytosol	44.36	44.36
GSMUA_Achr9P10960_001	Banana	mitochondrion, plastid	41.35	44.35
AT1G59730.1	Thale cress	cytosol	42.86	44.19
Os03t0800700-01	Rice	plastid	44.36	44.03
TraesCS5A01G448200.1	Wheat	cytosol	42.86	43.51
HORVU5Hr1G107210.1	Barley	cytosol	42.86	43.51
TraesCS5B01G452700.1	Wheat	cytosol, golgi, unclear	42.86	43.51
TraesCS5D01G454800.1	Wheat	cytosol	42.86	43.51
Zm00001d034491_P001	Maize	plastid	42.86	42.86
Os07t0190800-01	Rice	cytosol	44.36	42.75
Solyc02g084710.2.1	Tomato	extracellular	37.59	42.37
Bra027837.1-P	Field mustard	cytosol	40.6	42.19
CDY45144	Canola	cytosol	40.6	42.19
KRH69387	Soybean	plastid	43.61	42.03
KRH74748	Soybean	plastid	43.61	42.03
CDY30901	Canola	cytosol	39.85	41.41
CDY27290	Canola	cytosol	39.85	41.41
Solyc02g087630.2.1	Tomato	plastid	51.88	40.83
GSMUA_Achr7P16980_001	Banana	cytosol	31.58	40.78
Bra017898.1-P	Field mustard	cytosol	39.1	40.62
HORVU5Hr1G107170.1	Barley	cytosol	42.86	39.31
Solyc02g079960.2.1	Tomato	cytosol	33.08	35.2
CDY23543	Canola	cytosol	36.84	35.0
CDY48387	Canola	cytosol	36.84	34.75
Bra003976.1-P	Field mustard	cytosol	36.84	34.75
CDY38768	Canola	cytosol, plastid	39.1	34.44
Bra016258.1-P	Field mustard	cytosol	39.1	34.44
AT1G69880.1	Thale cress	plastid	37.59	33.78
CDY23544	Canola	cytosol	37.59	33.78
CDY11645	Canola	cytosol, plastid	38.35	33.77
Bra003977.1-P	Field mustard	cytosol	36.84	32.89
Solyc03g118560.1.1	Tomato	cytosol	30.08	32.79
GSMUA_Achr7P12220_001	Banana	cytosol	28.57	32.76
CDY48388	Canola	cytosol	36.09	32.65
HORVU6Hr1G018190.1	Barley	mitochondrion	21.05	30.11
Solyc03g095500.2.1	Tomato	cytosol	28.57	27.34
CDY03743	Canola	extracellular	17.29	26.74
Solyc09g015820.2.1	Tomato	plastid	30.83	26.62
CDY04457	Canola	cytosol	17.29	23.47
Solyc05g056300.2.1	Tomato	plastid	30.83	22.53
CDY11641	Canola	plastid	15.04	9.66

Protein Annotations

MapMan:10.6.1	Gene3D:3.40.30.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004791	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006662	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0015035	GO:GO:0016671	GO:GO:0019725	GO:GO:0034599
GO:GO:0045454	GO:GO:0047134	GO:GO:0055114	GO:GO:0098869	InterPro:IPR013766	UniProt:K4BNI7
PFAM:PF00085	PIRSF:PIRSF000077	PRINTS:PR00421	ScanProsite:PS00194	PFscan:PS51352	PANTHER:PTHR10438
PANTHER:PTHR10438:SF278	SUPFAM:SSF52833	EnsemblPlantsGene:Solyc04g005810.2	EnsemblPlants:Solyc04g005810.2.1	InterPro:Thioredoxin	InterPro:Thioredoxin-like_sf
InterPro:Thioredoxin_CS	InterPro:Thioredoxin_domain	UniParc:UPI00027665E2	:	:	:

Description

Thioredoxin [Source:UniProtKB/TrEMBL;Acc:K4BNI7]

Coordinates

chr4:+:523131..523878

Molecular Weight (calculated)

14899.8 Da

IEP (calculated)

6.942

GRAVY (calculated)

-0.244

Length

133 amino acids

Sequence
(BLAST)

001: MGANNSSSWK QTNNNALAST LPMKNQVIHF HSSTTWKIHF DSLKQTNKLI VIDFTASWCG PCRHMEPVIN DFASTYTDVV FIKIDVDELD DVAQEYGVQA
101: MPTFVLIKQG KIVDQLVGAD KDGLKKKIEI NKA

Best Arabidopsis Sequence Match ( AT5G39950.1 )
(BLAST)

001: MGGALSTVFG SGEDATAAGT ESEPSRVLKF SSSARWQLHF NEIKESNKLL VVDFSASWCG PCRMIEPAIH AMADKFNDVD FVKLDVDELP DVAKEFNVTA
101: MPTFVLVKRG KEIERIIGAK KDELEKKVSK LRA

Arabidopsis Description

TRX2Thioredoxin H2 [Source:UniProtKB/Swiss-Prot;Acc:Q38879]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.