Factsheet for VIT_01s0026g01460.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 5
mitochondrion 1
cytosol 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400045460	Potato	cytosol	36.36	64.71
KRH74754	Soybean	cytosol	66.94	64.29
KRH69383	Soybean	cytosol	66.94	63.78
KRH74753	Soybean	cytosol	64.46	62.9
KRG99185	Soybean	cytosol, plastid	61.98	61.98
KRH69384	Soybean	cytosol	65.29	61.72
KRH45834	Soybean	cytosol, plastid	61.16	61.16
Solyc05g006830.2.1	Tomato	cytosol, plastid	66.12	59.26
PGSC0003DMT400045450	Potato	cytosol	65.29	58.52
Solyc05g006870.2.1	Tomato	cytosol	63.64	57.04
Solyc05g006860.2.1	Tomato	cytosol	63.64	57.04
Solyc04g005810.2.1	Tomato	plastid	61.16	55.64
VIT_14s0066g02560.t01	Wine grape	cytosol	59.5	52.94
Solyc05g006850.2.1	Tomato	cytosol	57.85	51.85
VIT_18s0001g13250.t01	Wine grape	cytosol	45.45	48.25
KRH74748	Soybean	plastid	54.55	47.83
GSMUA_Achr9P10960_001	Banana	mitochondrion, plastid	48.76	47.58
TraesCS5B01G452700.1	Wheat	cytosol, golgi, unclear	51.24	47.33
TraesCS5D01G454800.1	Wheat	cytosol	51.24	47.33
KRH69387	Soybean	plastid	53.72	47.1
TraesCS5A01G448200.1	Wheat	cytosol	50.41	46.56
HORVU5Hr1G107210.1	Barley	cytosol	50.41	46.56
Os03t0800700-01	Rice	plastid	50.41	45.52
GSMUA_Achr2P17710_001	Banana	cytosol	46.28	44.09
Zm00001d034491_P001	Maize	plastid	47.93	43.61
EER90722	Sorghum	cytosol	47.93	43.61
VIT_04s0023g02700.t01	Wine grape	cytosol	41.32	43.48
AT1G59730.1	Thale cress	cytosol	46.28	43.41
HORVU5Hr1G107170.1	Barley	cytosol	50.41	42.07
Os07t0190800-01	Rice	cytosol	47.93	42.03
CDY27290	Canola	cytosol	43.8	41.41
Bra027837.1-P	Field mustard	cytosol	42.98	40.62
Bra017898.1-P	Field mustard	cytosol	42.98	40.62
CDY30901	Canola	cytosol	42.98	40.62
CDY45144	Canola	cytosol	42.98	40.62
GSMUA_Achr7P16980_001	Banana	cytosol	33.06	38.84
AT1G69880.1	Thale cress	plastid	45.45	37.16
CDY23543	Canola	cytosol	42.15	36.43
Bra003977.1-P	Field mustard	cytosol	44.63	36.24
CDY48387	Canola	cytosol	42.15	36.17
Bra003976.1-P	Field mustard	cytosol	42.15	36.17
CDY23544	Canola	cytosol	43.8	35.81
Bra016258.1-P	Field mustard	cytosol	43.8	35.1
CDY11645	Canola	cytosol, plastid	43.8	35.1
CDY38768	Canola	cytosol, plastid	43.8	35.1
VIT_19s0014g05090.t01	Wine grape	cytosol	36.36	34.92
VIT_00s0532g00030.t01	Wine grape	cytosol	36.36	34.92
CDY48388	Canola	cytosol	42.15	34.69
VIT_08s0040g00020.t01	Wine grape	cytosol	38.84	33.81
VIT_18s0001g13240.t01	Wine grape	cytosol	42.98	32.91
CDY03743	Canola	extracellular	22.31	31.4
GSMUA_Achr7P12220_001	Banana	cytosol	29.75	31.03
HORVU6Hr1G018190.1	Barley	mitochondrion	23.14	30.11
CDY04457	Canola	cytosol	23.14	28.57
VIT_04s0023g00740.t01	Wine grape	plastid	32.23	22.67
CDY11641	Canola	plastid	19.83	11.59

Protein Annotations

MapMan:10.6.1	EntrezGene:100246832	wikigene:100246832	Gene3D:3.40.30.10	ProteinID:AGG09341	ProteinID:AGG09341.1
EMBL:AM460488	ProteinID:CAN83268	ProteinID:CAN83268.1	ProteinID:CBI32032	ProteinID:CBI32032.3	ncoils:Coil
UniProt:D7TNF9	EMBL:FN596002	GO:GO:0003674	GO:GO:0003824	GO:GO:0004791	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006662	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0015035	GO:GO:0016671	GO:GO:0019725	GO:GO:0034599
GO:GO:0045454	GO:GO:0047134	GO:GO:0055114	GO:GO:0098869	InterPro:IPR013766	EMBL:KC195955
EntrezGene:LOC100246832	wikigene:LOC100246832	PFAM:PF00085	PIRSF:PIRSF000077	PRINTS:PR00421	ScanProsite:PS00194
PFscan:PS51352	PANTHER:PTHR10438	PANTHER:PTHR10438:SF278	SUPFAM:SSF52833	TIGR:TC56910	TIGRFAMs:TIGR01068
InterPro:Thioredoxin	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_CS	InterPro:Thioredoxin_domain	UniParc:UPI00015CB239	ArrayExpress:VIT_01s0026g01460
EnsemblPlantsGene:VIT_01s0026g01460	EnsemblPlants:VIT_01s0026g01460.t01	RefSeq:XP_002274663	RefSeq:XP_002274663.1	SEG:seg	:

Description

Thioredoxin [Source:UniProtKB/TrEMBL;Acc:D7TNF9]

Coordinates

chr1:-:10422568..10423398

Molecular Weight (calculated)

13578.2 Da

IEP (calculated)

6.787

GRAVY (calculated)

-0.349

Length

121 amino acids

Sequence
(BLAST)

001: MGASHSSSSK SSRVLTFNSS ASWKIHFEEA KSTGKLMVID FSATWCGPCR FMEPVINEFA EKYTDVEFVK IDVDELSDVA QEFGVQGMPT FLLIKRGTEV
101: DKVVGAKKEE LQKKIEAHRK N

Best Arabidopsis Sequence Match ( AT5G39950.1 )
(BLAST)

001: MGGALSTVFG SGEDATAAGT ESEPSRVLKF SSSARWQLHF NEIKESNKLL VVDFSASWCG PCRMIEPAIH AMADKFNDVD FVKLDVDELP DVAKEFNVTA
101: MPTFVLVKRG KEIERIIGAK KDELEKKVSK LRA

Arabidopsis Description

TRX2Thioredoxin H2 [Source:UniProtKB/Swiss-Prot;Acc:Q38879]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.