Factsheet for VIT_00s0532g00030.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_19s0014g05090.t01	Wine grape	cytosol	69.05	69.05
PGSC0003DMT400055905	Potato	cytosol	65.87	66.4
Solyc02g079960.2.1	Tomato	cytosol	64.29	64.8
GSMUA_Achr9P30140_001	Banana	cytosol	68.25	64.18
KRH10686	Soybean	cytosol	61.9	62.9
KRH21649	Soybean	cytosol, plastid	61.11	61.6
GSMUA_Achr5P26380_001	Banana	cytosol	56.35	55.04
Os04t0629500-01	Rice	cytosol	51.59	48.87
OQU82388	Sorghum	cytosol	49.21	48.06
Zm00001d026368_P001	Maize	cytosol, extracellular	48.41	47.29
TraesCS2D01G479600.1	Wheat	cytosol	47.62	43.17
TraesCS2A01G480300.1	Wheat	cytosol	47.62	43.17
HORVU2Hr1G107990.1	Barley	cytosol	46.83	42.75
TraesCS2B01G505100.1	Wheat	cytosol	46.83	42.45
VIT_18s0001g13250.t01	Wine grape	cytosol	37.3	41.23
VIT_04s0023g02700.t01	Wine grape	cytosol	36.51	40.0
VIT_01s0026g01460.t01	Wine grape	cytosol	34.92	36.36
VIT_08s0040g00020.t01	Wine grape	cytosol	33.33	30.22
VIT_14s0066g02560.t01	Wine grape	cytosol	32.54	30.15
VIT_18s0001g13240.t01	Wine grape	cytosol	35.71	28.48
VIT_04s0023g00740.t01	Wine grape	plastid	25.4	18.6

Protein Annotations

MapMan:10.6.1	EntrezGene:100233052	wikigene:100233052	Gene3D:3.40.30.10	ProteinID:ABX79345	ProteinID:ABX79345.1
ProteinID:ABX79347	ProteinID:ABX79347.1	ProteinID:ADN96597	ProteinID:ADN96597.1	ProteinID:AGG09345	ProteinID:AGG09345.1
ProteinID:CBI33224	ProteinID:CBI33224.3	UniProt:D7TRU8	EMBL:EU280164	EMBL:EU280166	EMBL:FN596044
GO:GO:0003674	GO:GO:0003824	GO:GO:0004791	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006662	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0015035	GO:GO:0016671	GO:GO:0019725	GO:GO:0034599	GO:GO:0045454	GO:GO:0047134
GO:GO:0055114	GO:GO:0098869	EMBL:HM370528	InterPro:IPR013766	EMBL:KC195959	PFAM:PF00085
PFscan:PS51352	PANTHER:PTHR10438	PANTHER:PTHR10438:SF242	SUPFAM:SSF52833	EntrezGene:TRX	wikigene:TRX
InterPro:Thioredoxin	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	UniParc:UPI00015CDC16	ArrayExpress:VIT_00s0532g00030	EnsemblPlantsGene:VIT_00s0532g00030
EnsemblPlants:VIT_00s0532g00030.t01	unigene:Vvi.8055	SEG:seg	:	:	:

Description

No Description!

Coordinates

chrUn:+:31429594..31430612

Molecular Weight (calculated)

14218.0 Da

IEP (calculated)

4.381

GRAVY (calculated)

-0.011

Length

126 amino acids

Sequence
(BLAST)

001: MENQEPEENK SRVIKVVSEE SWDFYISQAT TQGCPVVVHF TAAWCIPSVA MNQFFEELAS NYPDALFLTV DVDEVKAVAV KMEVKAMPTF LLMKEGAQVD
101: RLVGANPDEI RKRIDALVQS FRVYVA

Best Arabidopsis Sequence Match ( AT1G11530.1 )
(BLAST)

001: MARVVKIDSA ESWNFYVSQA KNQNCPIVAH FTALWCIPSV FMNSFFEELA FNYKDALFLI VDVDEVKEVA SQLEVKAMPT FLFLKDGNAM DKLVGANPDE
101: IKKRVDGFVQ SSRVVHIA

Arabidopsis Description

CXXS1Thioredoxin-like protein CXXS1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LDI5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.