CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d026368_P001	Maize	cytosol, extracellular	93.02	93.02
Os04t0629500-01	Rice	cytosol	84.5	81.95
TraesCS2D01G479600.1	Wheat	cytosol	69.77	64.75
TraesCS2A01G480300.1	Wheat	cytosol	69.77	64.75
TraesCS2B01G505100.1	Wheat	cytosol	68.99	64.03
HORVU2Hr1G107990.1	Barley	cytosol	67.44	63.04
Solyc02g079960.2.1	Tomato	cytosol	48.84	50.4
PGSC0003DMT400055905	Potato	cytosol	48.84	50.4
GSMUA_Achr5P26380_001	Banana	cytosol	50.39	50.39
KRH10686	Soybean	cytosol	48.06	50.0
KRH21649	Soybean	cytosol, plastid	48.06	49.6
VIT_00s0532g00030.t01	Wine grape	cytosol	48.06	49.21
Bra031769.1-P	Field mustard	cytosol	44.96	46.03
VIT_19s0014g05090.t01	Wine grape	cytosol	44.96	46.03
CDY34646	Canola	cytosol	44.96	46.03
KRH22228	Soybean	cytosol	43.41	45.9
AT1G11530.1	Thale cress	cytosol	41.86	45.76
KRH25890	Soybean	nucleus	43.41	44.44
KRH27111	Soybean	nucleus	42.64	43.65
KRH33304	Soybean	cytosol	41.86	42.86
KRH55615	Soybean	cytosol	41.86	42.86
OQU88584	Sorghum	cytosol	31.78	34.75
KXG31771	Sorghum	cytosol	34.88	30.0
EES19112	Sorghum	cytosol	30.23	29.1
EER98090	Sorghum	cytosol	24.81	28.32
OQU78269	Sorghum	cytosol	27.13	27.78
EER90722	Sorghum	cytosol	27.13	26.32
KXG34558	Sorghum	cytosol	24.81	26.02
EES19700	Sorghum	cytosol	25.58	25.38
KXG21303	Sorghum	plastid	22.48	15.1

Protein Annotations

MapMan:10.6.1	Gene3D:3.40.30.10	EntrezGene:8074752	UniProt:A0A1Z5RF67	GO:GO:0003674	GO:GO:0003756
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0006662	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0015035	GO:GO:0019725
GO:GO:0045454	GO:GO:0055114	InterPro:IPR013766	EnsemblPlants:OQU82388	ProteinID:OQU82388	ProteinID:OQU82388.1
PFAM:PF00085	PFscan:PS51352	PANTHER:PTHR10438	PANTHER:PTHR10438:SF242	EnsemblPlantsGene:SORBI_3006G226100	SUPFAM:SSF52833
InterPro:Thioredoxin	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	UniParc:UPI0001A87730	RefSeq:XP_002448582.1	SEG:seg

Description

hypothetical protein

Coordinates

chr6:-:57138522..57140212

Molecular Weight (calculated)

14316.0 Da

IEP (calculated)

5.166

GRAVY (calculated)

-0.139

Length

129 amino acids

Sequence
(BLAST)

001: MEIQHHGGVG NSKVVKVQSQ EAWDLFTDQA SKEGRPVVAH FGASWCVTSL SMNYKFEELA QTHPEVLFLY VDVDDVQSVS SKYGVKAMPT FFLIKNKEVV
101: SKIVGANPDE VKKLVDASAE PFQTQIVVE

Best Arabidopsis Sequence Match ( AT1G11530.1 )
(BLAST)

001: MARVVKIDSA ESWNFYVSQA KNQNCPIVAH FTALWCIPSV FMNSFFEELA FNYKDALFLI VDVDEVKEVA SQLEVKAMPT FLFLKDGNAM DKLVGANPDE
101: IKKRVDGFVQ SSRVVHIA

Arabidopsis Description

CXXS1Thioredoxin-like protein CXXS1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LDI5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.