CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d024835_P001	Maize	plastid	80.73	86.11
Zm00001d010871_P001	Maize	plastid	81.77	78.11
Os01t0913000-01	Rice	plastid	68.23	70.05
TraesCS3A01G418400.1	Wheat	plastid	66.15	67.2
TraesCS3B01G453600.1	Wheat	plastid	65.62	66.67
VIT_04s0023g00740.t01	Wine grape	plastid	55.73	62.21
GSMUA_Achr8P01040_001	Banana	plastid	56.25	60.34
KRH00940	Soybean	nucleus, plastid	56.25	60.34
KRH40285	Soybean	plastid	54.69	58.01
Solyc05g056300.2.1	Tomato	plastid	52.08	54.95
AT5G16400.1	Thale cress	plastid	52.6	54.59
PGSC0003DMT400059966	Potato	cytosol, extracellular, plastid	51.04	53.85
AT3G02730.1	Thale cress	plastid	48.96	52.81
Bra021417.1-P	Field mustard	plastid	50.0	52.75
CDY53739	Canola	plastid	49.48	52.49
CDY51539	Canola	plastid	47.92	51.11
CDY69984	Canola	plastid	49.48	51.08
Bra040596.1-P	Field mustard	plastid	47.4	50.28
Bra023564.1-P	Field mustard	plastid	48.96	50.27
CDY28704	Canola	plastid	46.88	50.0
CDY38116	Canola	plastid	47.92	49.2
GSMUA_Achr11P...	Banana	mitochondrion	34.38	40.99
OQU78269	Sorghum	cytosol	22.4	34.13
OQU88584	Sorghum	cytosol	20.83	33.9
EER98090	Sorghum	cytosol	17.19	29.2
EER90722	Sorghum	cytosol	19.79	28.57
EES19112	Sorghum	cytosol	18.75	26.87
KXG31771	Sorghum	cytosol	20.31	26.0
EES19700	Sorghum	cytosol	17.19	25.38
KXG34558	Sorghum	cytosol	15.62	24.39
OQU82388	Sorghum	cytosol	15.1	22.48

Protein Annotations

MapMan:10.5.4	Gene3D:3.40.30.10	UniProt:A0A1B6P6N7	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005623	GO:GO:0006662	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0015035
GO:GO:0019725	GO:GO:0045454	GO:GO:0055114	InterPro:IPR013766	EnsemblPlants:KXG21303	ProteinID:KXG21303
ProteinID:KXG21303.1	PFAM:PF00085	PRINTS:PR00421	ScanProsite:PS00194	PFscan:PS51352	PANTHER:PTHR10438
PANTHER:PTHR10438:SF258	EnsemblPlantsGene:SORBI_3009G043000	SUPFAM:SSF52833	InterPro:Thioredoxin	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_CS
InterPro:Thioredoxin_domain	UniParc:UPI0001FCD094	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:4093387..4094877

Molecular Weight (calculated)

20189.4 Da

IEP (calculated)

8.329

GRAVY (calculated)

0.049

Length

192 amino acids

Sequence
(BLAST)

001: MALRIPTISS SHGLASSPAP TCRPAVFLAV GSSSSWAAGA QQKRSLLLAT TTTTASETRG AGVLAPVRSS GIETSTSVGA EAVTGQVTEV NKDTFWPIVE
101: AAGDKVVVLD MYTEWCGPCK VMAPKFQEMS EKNLDVVFLK LDCNQDNKPL AKELGIKVVP TFKILKGGKV VKEVTGAKIE ELAHAIDTLK SG

Best Arabidopsis Sequence Match ( AT5G16400.1 )
(BLAST)

001: MPLSLRLAPS PTSFRYSPIT STGAGGFSPV KQHCRIPNSG VATKIGFCSG GGGVLDSGRR IGSCVVRCSL ETVNVTVGQV TEVDKDTFWP IVKAAGDKIV
101: VLDMYTQWCG PCKVIAPKYK ELSEKYQDMV FLKLDCNQDN KPLAKELGIR VVPTFKILKD NKVVKEVTGA KYEDLLAAIE AARSG

Arabidopsis Description

TRXF2TRXF2 [Source:UniProtKB/TrEMBL;Acc:A0A178UDV9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.