Factsheet for PGSC0003DMT400059966

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular, cytosol

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

cytosol: 22313117
extracellular: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g056300.2.1	Tomato	plastid	96.15	96.15
KRH00940	Soybean	nucleus, plastid	62.09	63.13
VIT_04s0023g00740.t01	Wine grape	plastid	59.34	62.79
KRH40285	Soybean	plastid	60.99	61.33
AT3G02730.1	Thale cress	plastid	58.79	60.11
CDY53739	Canola	plastid	56.59	56.91
Bra021417.1-P	Field mustard	plastid	56.59	56.59
Zm00001d024835_P001	Maize	plastid	55.49	56.11
GSMUA_Achr8P01040_001	Banana	plastid	54.95	55.87
AT5G16400.1	Thale cress	plastid	56.59	55.68
TraesCS3B01G453600.1	Wheat	plastid	56.59	54.5
TraesCS3A01G418400.1	Wheat	plastid	56.04	53.97
CDY51539	Canola	plastid	53.3	53.89
Bra040596.1-P	Field mustard	plastid	53.3	53.59
Os01t0913000-01	Rice	plastid	54.95	53.48
CDY28704	Canola	plastid	52.75	53.33
KXG21303	Sorghum	plastid	53.85	51.04
CDY69984	Canola	plastid	51.1	50.0
Zm00001d010871_P001	Maize	plastid	54.95	49.75
CDY38116	Canola	plastid	50.55	49.2
Bra023564.1-P	Field mustard	plastid	50.0	48.66
PGSC0003DMT400009306	Potato	cytosol	24.18	37.29
GSMUA_Achr11P...	Banana	mitochondrion	31.32	35.4
PGSC0003DMT400009623	Potato	cytosol	21.98	32.52
PGSC0003DMT400045460	Potato	cytosol	12.09	32.35
PGSC0003DMT400003564	Potato	plastid	23.63	30.28
PGSC0003DMT400045450	Potato	cytosol	20.88	28.15
PGSC0003DMT400059108	Potato	cytosol	19.78	25.9
PGSC0003DMT400076843	Potato	cytosol	11.54	25.61
PGSC0003DMT400055905	Potato	cytosol	17.58	25.6

Protein Annotations

MapMan:10.5.4	EntrezGene:102579084	Gene3D:3.40.30.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005623	GO:GO:0006662	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0015035
GO:GO:0019725	GO:GO:0045454	GO:GO:0055114	InterPro:IPR013766	UniProt:M1C4Z5	PFAM:PF00085
EnsemblPlantsGene:PGSC0003DMG400023333	PGSC:PGSC0003DMG400023333	EnsemblPlants:PGSC0003DMT400059966	PRINTS:PR00421	ScanProsite:PS00194	PFscan:PS51352
PANTHER:PTHR10438	PANTHER:PTHR10438:SF258	SUPFAM:SSF52833	InterPro:Thioredoxin	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_CS
InterPro:Thioredoxin_domain	UniParc:UPI0002959552	RefSeq:XP_006345775.2	SEG:seg	:	:

Description

Thioredoxin F1, chloroplastic [Source:PGSC_GENE;Acc:PGSC0003DMG400023333]

Coordinates

chr5:-:51774940..51776231

Molecular Weight (calculated)

19815.0 Da

IEP (calculated)

9.313

GRAVY (calculated)

-0.006

Length

182 amino acids

Sequence
(BLAST)

001: MALQVQVNQV LLKSSVAPTP AQSASSPWRF NNQSVVCVAG DYGFSSRVLR SRGLSLKVKC SSSDATVTTT TVTVGQVTEV CKDTFWPIVE AAGEKTVVVD
101: MYTQWCGPCK VIAPKFQELS KKYNDVVFLK LDCNQDNRPL AKELGIKVVP TFKILKNNKI VKEVTGAKLD DLVAAIEGVR SS

Best Arabidopsis Sequence Match ( AT3G02730.1 )
(BLAST)

001: MPLSLRLSPS PTALSPTTGG FGPSRKQCRI PYSGVPTTKI GFCSLDSRKR GDSSVVRCSL ETVNVSVGQV TEVDKDTFWP IVKAAGEKLV VLDMYTQWCG
101: PCKVIAPKYK ALSEKYDDVV FLKLDCNPDN RPLAKELGIR VVPTFKILKD NKVVKEVTGA KYDDLVAAIE TARSAASG

Arabidopsis Description

TRXF1TRXF1 [Source:UniProtKB/TrEMBL;Acc:A0A178VBJ7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.