Factsheet for PGSC0003DMT400045460

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g006870.2.1	Tomato	cytosol	98.53	49.63
Solyc05g006860.2.1	Tomato	cytosol	91.18	45.93
PGSC0003DMT400045450	Potato	cytosol	86.76	43.7
Solyc05g006850.2.1	Tomato	cytosol	80.88	40.74
VIT_01s0026g01460.t01	Wine grape	cytosol	64.71	36.36
KRH74753	Soybean	cytosol	64.71	35.48
KRH74754	Soybean	cytosol	63.24	34.13
KRH69383	Soybean	cytosol	63.24	33.86
KRH69384	Soybean	cytosol	63.24	33.59
KRG99185	Soybean	cytosol, plastid	58.82	33.06
KRH45834	Soybean	cytosol, plastid	57.35	32.23
PGSC0003DMT400076843	Potato	cytosol	36.76	30.49
PGSC0003DMT400009623	Potato	cytosol	54.41	30.08
PGSC0003DMT400003564	Potato	plastid	61.76	29.58
PGSC0003DMT400009306	Potato	cytosol	50.0	28.81
GSMUA_Achr9P10960_001	Banana	mitochondrion, plastid	47.06	25.81
CDY03743	Canola	extracellular	32.35	25.58
KRH69387	Soybean	plastid	51.47	25.36
GSMUA_Achr2P17710_001	Banana	cytosol	47.06	25.2
KRH74748	Soybean	plastid	50.0	24.64
Os03t0800700-01	Rice	plastid	48.53	24.63
HORVU5Hr1G107210.1	Barley	cytosol	47.06	24.43
TraesCS5A01G448200.1	Wheat	cytosol	47.06	24.43
TraesCS5B01G452700.1	Wheat	cytosol, golgi, unclear	47.06	24.43
TraesCS5D01G454800.1	Wheat	cytosol	47.06	24.43
EER90722	Sorghum	cytosol	47.06	24.06
Zm00001d034491_P001	Maize	plastid	45.59	23.31
PGSC0003DMT400055905	Potato	cytosol	42.65	23.2
Os07t0190800-01	Rice	cytosol	47.06	23.19
CDY04457	Canola	cytosol	32.35	22.45
HORVU5Hr1G107170.1	Barley	cytosol	47.06	22.07
CDY23544	Canola	cytosol	47.06	21.62
CDY23543	Canola	cytosol	44.12	21.43
CDY48387	Canola	cytosol	44.12	21.28
Bra003976.1-P	Field mustard	cytosol	44.12	21.28
AT1G69880.1	Thale cress	plastid	45.59	20.95
AT1G59730.1	Thale cress	cytosol	39.71	20.93
Bra003977.1-P	Field mustard	cytosol	45.59	20.81
Bra016258.1-P	Field mustard	cytosol	45.59	20.53
CDY38768	Canola	cytosol, plastid	45.59	20.53
CDY11645	Canola	cytosol, plastid	45.59	20.53
CDY48388	Canola	cytosol	42.65	19.73
CDY30901	Canola	cytosol	36.76	19.53
Bra017898.1-P	Field mustard	cytosol	36.76	19.53
Bra027837.1-P	Field mustard	cytosol	36.76	19.53
CDY27290	Canola	cytosol	36.76	19.53
CDY45144	Canola	cytosol	36.76	19.53
PGSC0003DMT400059108	Potato	cytosol	33.82	16.55
GSMUA_Achr7P16980_001	Banana	cytosol	25.0	16.5
PGSC0003DMT400059966	Potato	cytosol, extracellular, plastid	32.35	12.09
GSMUA_Achr7P12220_001	Banana	cytosol	16.18	9.48
CDY11641	Canola	plastid	25.0	8.21
HORVU6Hr1G018190.1	Barley	mitochondrion	8.82	6.45

Protein Annotations

Gene3D:3.40.30.10	MapMan:35.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005623
GO:GO:0006662	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0015035	GO:GO:0019725
GO:GO:0045454	GO:GO:0055114	InterPro:IPR013766	UniProt:M1BHP3	PFAM:PF00085	EnsemblPlantsGene:PGSC0003DMG400017634
PGSC:PGSC0003DMG400017634	EnsemblPlants:PGSC0003DMT400045460	PANTHER:PTHR10438	PANTHER:PTHR10438:SF278	SUPFAM:SSF52833	InterPro:Thioredoxin
InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	UniParc:UPI00029688C6	SEG:seg	:	:

Description

Thioredoxin h6 [Source:PGSC_GENE;Acc:PGSC0003DMG400017634]

Coordinates

chr5:+:6163764..6164223

Molecular Weight (calculated)

7730.6 Da

IEP (calculated)

5.064

GRAVY (calculated)

0.021

Length

68 amino acids

Sequence
(BLAST)

1: MEPILNDFAA KYIDVEFVKI DVDELDEYGV QAMPTFVLIK KGKVVDKIVG ADKDGLKMKI EKHKAMFI

Best Arabidopsis Sequence Match ( AT1G19730.1 )
(BLAST)

001: MAAEEGQVIG CHTNDVWTVQ LDKAKESNKL IVIDFTASWC PPCRMIAPIF NDLAKKFMSS AIFFKVDVDE LQSVAKEFGV EAMPTFVFIK AGEVVDKLVG
101: ANKEDLQAKI VKHTGVTTA

Arabidopsis Description

TRX4Thioredoxin H4 [Source:UniProtKB/Swiss-Prot;Acc:Q39239]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.