Factsheet for PGSC0003DMT400045450

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g006830.2.1	Tomato	cytosol, plastid	98.52	98.52
PGSC0003DMT400045460	Potato	cytosol	43.7	86.76
KRH74754	Soybean	cytosol	61.48	65.87
KRH69383	Soybean	cytosol	61.48	65.35
VIT_01s0026g01460.t01	Wine grape	cytosol	58.52	65.29
KRH74753	Soybean	cytosol	59.26	64.52
KRH69384	Soybean	cytosol	58.52	61.72
KRG99185	Soybean	cytosol, plastid	53.33	59.5
KRH45834	Soybean	cytosol, plastid	52.59	58.68
PGSC0003DMT400003564	Potato	plastid	57.78	54.93
PGSC0003DMT400009306	Potato	cytosol	41.48	47.46
GSMUA_Achr2P17710_001	Banana	cytosol	43.7	46.46
GSMUA_Achr9P10960_001	Banana	mitochondrion, plastid	42.22	45.97
Os07t0190800-01	Rice	cytosol	46.67	45.65
KRH74748	Soybean	plastid	45.93	44.93
PGSC0003DMT400009623	Potato	cytosol	40.74	44.72
KRH69387	Soybean	plastid	45.19	44.2
AT1G59730.1	Thale cress	cytosol	41.48	43.41
Os03t0800700-01	Rice	plastid	42.96	43.28
EER90722	Sorghum	cytosol	42.22	42.86
HORVU5Hr1G107210.1	Barley	cytosol	41.48	42.75
TraesCS5A01G448200.1	Wheat	cytosol	41.48	42.75
TraesCS5B01G452700.1	Wheat	cytosol, golgi, unclear	41.48	42.75
TraesCS5D01G454800.1	Wheat	cytosol	41.48	42.75
GSMUA_Achr7P16980_001	Banana	cytosol	32.59	42.72
CDY45144	Canola	cytosol	40.0	42.19
Bra027837.1-P	Field mustard	cytosol	40.0	42.19
CDY30901	Canola	cytosol	39.26	41.41
CDY27290	Canola	cytosol	39.26	41.41
Bra017898.1-P	Field mustard	cytosol	39.26	41.41
CDY23543	Canola	cytosol	42.22	40.71
CDY48387	Canola	cytosol	42.22	40.43
Bra003976.1-P	Field mustard	cytosol	42.22	40.43
Zm00001d034491_P001	Maize	plastid	39.26	39.85
HORVU5Hr1G107170.1	Barley	cytosol	41.48	38.62
AT1G69880.1	Thale cress	plastid	41.48	37.84
CDY23544	Canola	cytosol	41.48	37.84
CDY38768	Canola	cytosol, plastid	42.22	37.75
Bra016258.1-P	Field mustard	cytosol	42.22	37.75
CDY11645	Canola	cytosol, plastid	41.48	37.09
Bra003977.1-P	Field mustard	cytosol	40.74	36.91
CDY48388	Canola	cytosol	39.26	36.05
PGSC0003DMT400055905	Potato	cytosol	33.33	36.0
PGSC0003DMT400076843	Potato	cytosol	20.74	34.15
GSMUA_Achr7P12220_001	Banana	cytosol	25.93	30.17
PGSC0003DMT400059108	Potato	cytosol	29.63	28.78
HORVU6Hr1G018190.1	Barley	mitochondrion	19.26	27.96
CDY03743	Canola	extracellular	16.3	25.58
CDY04457	Canola	cytosol	16.3	22.45
PGSC0003DMT400059966	Potato	cytosol, extracellular, plastid	28.15	20.88
CDY11641	Canola	plastid	17.78	11.59

Protein Annotations

MapMan:10.6.1	Gene3D:3.40.30.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005623
GO:GO:0006662	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0015035	GO:GO:0019725
GO:GO:0045454	GO:GO:0055114	InterPro:IPR013766	UniProt:M1BHP2	PFAM:PF00085	EnsemblPlantsGene:PGSC0003DMG400017632
PGSC:PGSC0003DMG400017632	EnsemblPlants:PGSC0003DMT400045450	PIRSF:PIRSF000077	PRINTS:PR00421	ScanProsite:PS00194	PFscan:PS51352
PANTHER:PTHR10438	PANTHER:PTHR10438:SF278	SUPFAM:SSF52833	TIGRFAMs:TIGR01068	InterPro:Thioredoxin	InterPro:Thioredoxin-like_sf
InterPro:Thioredoxin_CS	InterPro:Thioredoxin_domain	UniParc:UPI000294AB62	SEG:seg	:	:

Description

Thioredoxin H [Source:PGSC_GENE;Acc:PGSC0003DMG400017632]

Coordinates

chr5:+:6199577..6203453

Molecular Weight (calculated)

15405.6 Da

IEP (calculated)

8.668

GRAVY (calculated)

-0.296

Length

135 amino acids

Sequence
(BLAST)

001: MGANYSSTWH ETHNMPITPQ IKRSQVIAFH SSTKWKLHFD SLKNTNKLIV IDFTATWCGP CKYMEPVLND FAAKYTDVEF VKIDVDELDD VAQEYGVQAM
101: PTFILIKKGK VVDKIVGADK DGLQKKIQKH KAIYV

Best Arabidopsis Sequence Match ( AT5G39950.1 )
(BLAST)

001: MGGALSTVFG SGEDATAAGT ESEPSRVLKF SSSARWQLHF NEIKESNKLL VVDFSASWCG PCRMIEPAIH AMADKFNDVD FVKLDVDELP DVAKEFNVTA
101: MPTFVLVKRG KEIERIIGAK KDELEKKVSK LRA

Arabidopsis Description

TRX2Thioredoxin H2 [Source:UniProtKB/Swiss-Prot;Acc:Q38879]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.