CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 3
mitochondrion 1
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d034491_P001	Maize	plastid	90.98	90.98
HORVU5Hr1G107210.1	Barley	cytosol	75.19	76.34
TraesCS5A01G448200.1	Wheat	cytosol	75.19	76.34
TraesCS5D01G454800.1	Wheat	cytosol	74.44	75.57
TraesCS5B01G452700.1	Wheat	cytosol, golgi, unclear	73.68	74.81
Os03t0800700-01	Rice	plastid	72.93	72.39
HORVU5Hr1G107170.1	Barley	cytosol	75.19	68.97
GSMUA_Achr2P17710_001	Banana	cytosol	58.65	61.42
GSMUA_Achr7P16980_001	Banana	cytosol	42.11	54.37
KRH40137	Soybean	endoplasmic reticulum	51.13	51.91
KRH01123	Soybean	cytosol	47.37	51.22
OQU88584	Sorghum	cytosol	45.11	50.85
KRH40138	Soybean	cytosol, plastid	47.37	50.4
VIT_14s0066g02560.t01	Wine grape	cytosol	51.13	50.0
KRH01124	Soybean	endoplasmic reticulum	48.87	48.87
VIT_01s0026g01460.t01	Wine grape	cytosol	43.61	47.93
PGSC0003DMT400045460	Potato	cytosol	24.06	47.06
Bra040318.1-P	Field mustard	cytosol	45.11	46.15
CDY65333	Canola	cytosol	45.86	45.86
AT5G39950.1	Thale cress	cytosol	45.86	45.86
KRH74754	Soybean	cytosol	42.86	45.24
Bra028445.1-P	Field mustard	cytosol	45.11	45.11
CDX67442	Canola	cytosol	45.11	44.78
PGSC0003DMT400003564	Potato	plastid	47.37	44.37
Solyc04g005810.2.1	Tomato	plastid	44.36	44.36
KRH74753	Soybean	cytosol	40.6	43.55
GSMUA_Achr7P12220_001	Banana	cytosol	37.59	43.1
Solyc05g006830.2.1	Tomato	cytosol, plastid	43.61	42.96
KRH40136	Soybean	endoplasmic reticulum	50.38	42.68
KRH69383	Soybean	cytosol	40.6	42.52
PGSC0003DMT400045450	Potato	cytosol	42.86	42.22
Solyc05g006870.2.1	Tomato	cytosol	42.86	42.22
KRH01119	Soybean	cytosol	43.61	41.43
KRH45834	Soybean	cytosol, plastid	37.59	41.32
KRH69384	Soybean	cytosol	39.1	40.62
KRG99185	Soybean	cytosol, plastid	36.84	40.5
Solyc05g006860.2.1	Tomato	cytosol	40.6	40.0
Bra017898.1-P	Field mustard	cytosol	38.35	39.84
Bra027837.1-P	Field mustard	cytosol	38.35	39.84
CDY30901	Canola	cytosol	38.35	39.84
CDY45144	Canola	cytosol	38.35	39.84
OQU78269	Sorghum	cytosol	37.59	39.68
AT1G59730.1	Thale cress	cytosol	38.35	39.53
CDY27290	Canola	cytosol	37.59	39.06
Solyc05g006850.2.1	Tomato	cytosol	39.1	38.52
CDY57101	Canola	cytosol	47.37	38.18
KRH69387	Soybean	plastid	39.1	37.68
KRH74748	Soybean	plastid	38.35	36.96
KXG34558	Sorghum	cytosol	33.08	35.77
CDY11645	Canola	cytosol, plastid	39.85	35.1
CDY38768	Canola	cytosol, plastid	39.85	35.1
Bra016258.1-P	Field mustard	cytosol	39.85	35.1
CDY03743	Canola	extracellular	22.56	34.88
CDY23544	Canola	cytosol	38.35	34.46
Solyc02g087630.2.1	Tomato	plastid	43.61	34.32
CDY23543	Canola	cytosol	36.09	34.29
Bra003976.1-P	Field mustard	cytosol	36.09	34.04
CDY48387	Canola	cytosol	36.09	34.04
AT1G69880.1	Thale cress	plastid	36.84	33.11
Bra003977.1-P	Field mustard	cytosol	36.84	32.89
EES19112	Sorghum	cytosol	33.08	32.84
CDY37032	Canola	cytosol	45.86	32.62
KXG31771	Sorghum	cytosol	36.09	32.0
CDY48388	Canola	cytosol	35.34	31.97
EER98090	Sorghum	cytosol	27.07	31.86
CDY04457	Canola	cytosol	23.31	31.63
EES19700	Sorghum	cytosol	29.32	30.0
OQU82388	Sorghum	cytosol	26.32	27.13
KXG21303	Sorghum	plastid	28.57	19.79
CDY11641	Canola	plastid	17.29	11.11

Protein Annotations

MapMan:10.6.1	Gene3D:3.40.30.10	EntrezGene:8061153	UniProt:C5WX30	EnsemblPlants:EER90722	ProteinID:EER90722
ProteinID:EER90722.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004791	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006662	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0015035	GO:GO:0016671	GO:GO:0019725	GO:GO:0034599	GO:GO:0045454
GO:GO:0047134	GO:GO:0055114	GO:GO:0098869	InterPro:IPR013766	PFAM:PF00085	PIRSF:PIRSF000077
PRINTS:PR00421	ScanProsite:PS00194	PFscan:PS51352	PANTHER:PTHR10438	PANTHER:PTHR10438:SF243	EnsemblPlantsGene:SORBI_3001G052900
SUPFAM:SSF52833	unigene:Sbi.10624	InterPro:Thioredoxin	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_CS	InterPro:Thioredoxin_domain
UniParc:UPI0001A82104	RefSeq:XP_002463724.1	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:3908115..3910650

Molecular Weight (calculated)

14658.6 Da

IEP (calculated)

5.765

GRAVY (calculated)

-0.061

Length

133 amino acids

Sequence
(BLAST)

001: MGNFISSLVT PPPAADDPNC AVVAAHSKTT YDEQWAAHKN GGKLMVIDFS ASWCGPCRFI EPAFKELASR FTDAIFVKID VDELAEVART WKVEAMPTFV
101: LVKDGKEVSR VIGAKKDELE RKIQMFIMSS SSS

Best Arabidopsis Sequence Match ( AT5G39950.1 )
(BLAST)

001: MGGALSTVFG SGEDATAAGT ESEPSRVLKF SSSARWQLHF NEIKESNKLL VVDFSASWCG PCRMIEPAIH AMADKFNDVD FVKLDVDELP DVAKEFNVTA
101: MPTFVLVKRG KEIERIIGAK KDELEKKVSK LRA

Arabidopsis Description

TRX2Thioredoxin H2 [Source:UniProtKB/Swiss-Prot;Acc:Q38879]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.