CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 3
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
mitochondrion: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH01124	Soybean	endoplasmic reticulum	71.34	84.21
AT5G39950.1	Thale cress	cytosol	58.6	69.17
Bra028445.1-P	Field mustard	cytosol	57.96	68.42
CDX67442	Canola	cytosol	57.96	67.91
CDY65333	Canola	cytosol	57.32	67.67
VIT_14s0066g02560.t01	Wine grape	cytosol	57.32	66.18
KRH40137	Soybean	endoplasmic reticulum	54.78	65.65
PGSC0003DMT400003564	Potato	plastid	57.96	64.08
Bra040318.1-P	Field mustard	cytosol	52.23	63.08
KRH74754	Soybean	cytosol	47.77	59.52
KRH69383	Soybean	cytosol	47.77	59.06
KRH74753	Soybean	cytosol	46.5	58.87
KRH69384	Soybean	cytosol	47.77	58.59
KRH01123	Soybean	cytosol	45.86	58.54
KRH40138	Soybean	cytosol, plastid	45.86	57.6
TraesCS5D01G454800.1	Wheat	cytosol	45.86	54.96
TraesCS5B01G452700.1	Wheat	cytosol, golgi, unclear	45.86	54.96
TraesCS5A01G448200.1	Wheat	cytosol	45.22	54.2
HORVU5Hr1G107210.1	Barley	cytosol	45.22	54.2
KRG99185	Soybean	cytosol, plastid	40.76	52.89
KRH45834	Soybean	cytosol, plastid	40.76	52.89
CDY57101	Canola	cytosol	54.14	51.52
Os03t0800700-01	Rice	plastid	43.95	51.49
GSMUA_Achr2P17710_001	Banana	cytosol	40.76	50.39
Zm00001d034491_P001	Maize	plastid	42.68	50.38
EER90722	Sorghum	cytosol	42.68	50.38
GSMUA_Achr9P10960_001	Banana	mitochondrion, plastid	39.49	50.0
Os07t0190800-01	Rice	cytosol	43.31	49.28
KRH76717	Soybean	endoplasmic reticulum, nucleus	37.58	49.17
Solyc02g087630.2.1	Tomato	plastid	52.87	49.11
HORVU5Hr1G107170.1	Barley	cytosol	45.22	48.97
KRH51778	Soybean	endoplasmic reticulum	36.31	48.72
KRH28739	Soybean	cytosol	35.67	46.67
GSMUA_Achr7P16980_001	Banana	cytosol	30.57	46.6
KRH01119	Soybean	cytosol	41.4	46.43
KRH15131	Soybean	cytosol, nucleus	35.03	46.22
KRH61100	Soybean	cytosol	34.39	46.15
KRH74748	Soybean	plastid	40.13	45.65
CDY37032	Canola	cytosol	52.87	44.38
KRH69387	Soybean	plastid	38.85	44.2
KRH05879	Soybean	endoplasmic reticulum	33.12	42.28
KRH10686	Soybean	cytosol	28.66	36.29
KRH09556	Soybean	cytosol	31.21	35.77
KRH00477	Soybean	cytosol	30.57	34.53
GSMUA_Achr7P12220_001	Banana	cytosol	25.48	34.48
KRH21649	Soybean	cytosol, plastid	26.75	33.6
KRH22228	Soybean	cytosol	25.48	32.79
KRH64869	Soybean	cytosol	31.85	32.68
HORVU6Hr1G018190.1	Barley	mitochondrion	19.11	32.26
KRH27111	Soybean	nucleus	25.48	31.75
KRH25890	Soybean	nucleus	25.48	31.75
KRH55615	Soybean	cytosol	24.84	30.95
KRH33304	Soybean	cytosol	24.84	30.95
KRH40706	Soybean	mitochondrion	30.57	28.4
KRH40285	Soybean	plastid	28.03	24.31
KRH00940	Soybean	nucleus, plastid	27.39	24.02

Protein Annotations

MapMan:10.6.1	Gene3D:3.40.30.10	EMBL:ACUP02006021	EMBL:BT091576	UniProt:C6T2B8	EnsemblPlantsGene:GLYMA_09G240800
GO:GO:0003674	GO:GO:0003824	GO:GO:0004791	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006662	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0015035	GO:GO:0016671	GO:GO:0019725	GO:GO:0034599	GO:GO:0045454	GO:GO:0047134
GO:GO:0055114	GO:GO:0098869	InterPro:IPR013766	EnsemblPlants:KRH40136	ProteinID:KRH40136	ProteinID:KRH40136.1
PFAM:PF00085	PIRSF:PIRSF000077	PRINTS:PR00421	ScanProsite:PS00194	PFscan:PS51352	PANTHER:PTHR10438
PANTHER:PTHR10438:SF243	SUPFAM:SSF52833	TIGRFAMs:TIGR01068	InterPro:Thioredoxin	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_CS
InterPro:Thioredoxin_domain	UniParc:UPI0001B14F8A	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:46318690..46319700

Molecular Weight (calculated)

17688.1 Da

IEP (calculated)

8.101

GRAVY (calculated)

-0.402

Length

157 amino acids

Sequence
(BLAST)

001: MKYYLPNLYL VRKEYHDHHR KAMGAILSAL TGGAATAATS SPESSASRVQ SFHSSARWQL HFNELKETNK LVVIDFSASW CGPCKFIEPA IHAMSEKFTD
101: VDFVKIDVDE LPDVAKEFNV EAMPTFVLCK KGKEVDKVVG AKKDELEKKI EKHRSQS

Best Arabidopsis Sequence Match ( AT5G39950.1 )
(BLAST)

001: MGGALSTVFG SGEDATAAGT ESEPSRVLKF SSSARWQLHF NEIKESNKLL VVDFSASWCG PCRMIEPAIH AMADKFNDVD FVKLDVDELP DVAKEFNVTA
101: MPTFVLVKRG KEIERIIGAK KDELEKKVSK LRA

Arabidopsis Description

TRX2Thioredoxin H2 [Source:UniProtKB/Swiss-Prot;Acc:Q38879]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.