CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH51778	Soybean	endoplasmic reticulum	86.32	86.32
KRH76717	Soybean	endoplasmic reticulum, nucleus	66.67	65.0
Solyc04g080850.2.1	Tomato	extracellular	67.52	64.23
PGSC0003DMT400009623	Potato	cytosol	66.67	63.41
KRH28739	Soybean	cytosol	64.1	62.5
KRH15131	Soybean	cytosol, nucleus	63.25	62.18
KRH05879	Soybean	endoplasmic reticulum	62.39	59.35
TraesCS1B01G339000.1	Wheat	cytosol	56.41	55.93
TraesCS1D01G327500.1	Wheat	cytosol, plastid	56.41	55.46
HORVU1Hr1G075560.1	Barley	cytosol	52.14	50.0
Zm00001d038652_P003	Maize	cytosol	53.85	49.22
TraesCS1B01G338800.1	Wheat	cytosol, golgi, plastid, unclear	52.99	48.82
KRH01123	Soybean	cytosol	51.28	48.78
TraesCS1A01G325600.1	Wheat	cytosol	53.85	48.46
TraesCS7A01G562100.1	Wheat	cytosol	43.59	48.11
OQU78269	Sorghum	cytosol	51.28	47.62
KRH40137	Soybean	endoplasmic reticulum	50.43	45.04
KRH74753	Soybean	cytosol	46.15	43.55
KRH45834	Soybean	cytosol, plastid	44.44	42.98
KRH69384	Soybean	cytosol	46.15	42.19
KRG99185	Soybean	cytosol, plastid	42.73	41.32
KRH74754	Soybean	cytosol	44.44	41.27
KRH40138	Soybean	cytosol, plastid	43.59	40.8
TraesCS7D01G001000.1	Wheat	cytosol	39.32	40.71
KRH69383	Soybean	cytosol	43.59	40.16
KRH01124	Soybean	endoplasmic reticulum	44.44	39.1
KRH01119	Soybean	cytosol	45.3	37.86
KRH09556	Soybean	cytosol	41.88	35.77
KRH10686	Soybean	cytosol	37.61	35.48
KRH21649	Soybean	cytosol, plastid	37.61	35.2
KRH40136	Soybean	endoplasmic reticulum	46.15	34.39
KRH00477	Soybean	cytosol	39.32	33.09
KRH22228	Soybean	cytosol	34.19	32.79
KRH64869	Soybean	cytosol	42.73	32.68
KRH74748	Soybean	plastid	38.46	32.61
KRH69387	Soybean	plastid	37.61	31.88
KRH27111	Soybean	nucleus	32.48	30.16
KRH25890	Soybean	nucleus	32.48	30.16
KRH55615	Soybean	cytosol	30.77	28.57
KRH33304	Soybean	cytosol	28.21	26.19
KRH40706	Soybean	mitochondrion	37.61	26.04
KRH00940	Soybean	nucleus, plastid	32.48	21.23
KRH40285	Soybean	plastid	32.48	20.99

Protein Annotations

MapMan:10.6.1	MapMan:18.7.2	Gene3D:3.40.30.10	EMBL:ACUP02002155	EnsemblPlantsGene:GLYMA_04G028500	GO:GO:0003674
GO:GO:0003824	GO:GO:0004791	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006662	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0015035
GO:GO:0016671	GO:GO:0019725	GO:GO:0034599	GO:GO:0045454	GO:GO:0047134	GO:GO:0055114
GO:GO:0098869	UniProt:I1JT75	InterPro:IPR013766	EnsemblPlants:KRH61100	ProteinID:KRH61100	ProteinID:KRH61100.1
PFAM:PF00085	PIRSF:PIRSF000077	PRINTS:PR00421	ScanProsite:PS00194	PFscan:PS51352	PANTHER:PTHR10438
PANTHER:PTHR10438:SF293	SUPFAM:SSF52833	InterPro:Thioredoxin	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_CS	InterPro:Thioredoxin_domain
UniParc:UPI0001BA9120	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:2316240..2318296

Molecular Weight (calculated)

13094.1 Da

IEP (calculated)

4.996

GRAVY (calculated)

0.050

Length

117 amino acids

Sequence
(BLAST)

001: MAEEGQVIGV HSVEEWEEHL KKGQESKKLI VVDFTASWCG PCRFIAPILA DMAKKLPNVT FLKVDVDELA TVSREWEVEA MPTFLFLKEG KLVKKLVGAR
101: KEELQDIIVK LAAIDAA

Best Arabidopsis Sequence Match ( AT3G51030.1 )
(BLAST)

001: MASEEGQVIA CHTVETWNEQ LQKANESKTL VVVDFTASWC GPCRFIAPFF ADLAKKLPNV LFLKVDTDEL KSVASDWAIQ AMPTFMFLKE GKILDKVVGA
101: KKDELQSTIA KHLA

Arabidopsis Description

TRX1Thioredoxin H1 [Source:UniProtKB/Swiss-Prot;Acc:P29448]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.