Skip to main content
crop-pal logo
Soybean
Search for another protein from :
Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • nucleus 1
  • plastid 1
  • cytosol 4
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
EpiLoc:plastid
MultiLoc:cytosol
Plant-mPloc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 nucleus: 21132161
endoplasmic reticulum: 23041469
endoplasmic reticulum: 28499913
mitochondrion: 28499913
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 23041469 doi
S Komatsu, R Kuji, Y Nanjo, S Hiraga, K Furukawa
National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH61100 Soybean cytosol 86.32 86.32
KRH15131 Soybean cytosol, nucleus 71.79 70.59
KRH76717 Soybean endoplasmic reticulum, nucleus 71.79 70.0
KRH28739 Soybean cytosol 68.38 66.67
PGSC0003DMT400009623 Potato cytosol 70.09 66.67
KRH05879 Soybean endoplasmic reticulum 70.09 66.67
Solyc04g080850.2.1 Tomato extracellular 70.09 66.67
TraesCS1B01G339000.1 Wheat cytosol 60.68 60.17
TraesCS1D01G327500.1 Wheat cytosol, plastid 60.68 59.66
HORVU1Hr1G075560.1 Barley cytosol 52.99 50.82
TraesCS1B01G338800.1 Wheat cytosol, golgi, plastid, unclear 53.85 49.61
TraesCS1A01G325600.1 Wheat cytosol 54.7 49.23
Zm00001d038652_P003 Maize cytosol 53.85 49.22
OQU78269 Sorghum cytosol 52.99 49.21
TraesCS7A01G562100.1 Wheat cytosol 44.44 49.06
KRH01123 Soybean cytosol 51.28 48.78
KRH74753 Soybean cytosol 50.43 47.58
KRH40137 Soybean endoplasmic reticulum 52.14 46.56
KRH69384 Soybean cytosol 50.43 46.09
KRH45834 Soybean cytosol, plastid 46.15 44.63
KRH74754 Soybean cytosol 47.86 44.44
KRG99185 Soybean cytosol, plastid 45.3 43.8
KRH69383 Soybean cytosol 47.01 43.31
KRH40138 Soybean cytosol, plastid 46.15 43.2
TraesCS7D01G001000.1 Wheat cytosol 40.17 41.59
KRH01124 Soybean endoplasmic reticulum 46.15 40.6
KRH01119 Soybean cytosol 43.59 36.43
KRH40136 Soybean endoplasmic reticulum 48.72 36.31
KRH10686 Soybean cytosol 38.46 36.29
KRH74748 Soybean plastid 42.73 36.23
KRH09556 Soybean cytosol 41.88 35.77
KRH69387 Soybean plastid 41.88 35.51
KRH21649 Soybean cytosol, plastid 37.61 35.2
KRH00477 Soybean cytosol 40.17 33.81
KRH22228 Soybean cytosol 35.04 33.61
KRH64869 Soybean cytosol 42.73 32.68
KRH27111 Soybean nucleus 33.33 30.95
KRH25890 Soybean nucleus 33.33 30.95
KRH55615 Soybean cytosol 30.77 28.57
KRH33304 Soybean cytosol 29.06 26.98
KRH40706 Soybean mitochondrion 38.46 26.63
KRH40285 Soybean plastid 35.9 23.2
KRH00940 Soybean nucleus, plastid 35.04 22.91
Protein Annotations
MapMan:10.6.1EntrezGene:100499879MapMan:18.7.2Gene3D:3.40.30.10EMBL:ACUP02003389EnsemblPlantsGene:GLYMA_06G028600
GO:GO:0003674GO:GO:0003824GO:GO:0004791GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0006662GO:GO:0006950GO:GO:0008150GO:GO:0008152GO:GO:0009987
GO:GO:0015035GO:GO:0016671GO:GO:0019725GO:GO:0034599GO:GO:0045454GO:GO:0047134
GO:GO:0055114GO:GO:0098869UniProt:I1K7N6InterPro:IPR013766EnsemblPlants:KRH51778ProteinID:KRH51778
ProteinID:KRH51778.1PFAM:PF00085PIRSF:PIRSF000077PRINTS:PR00421ScanProsite:PS00194PFscan:PS51352
PANTHER:PTHR10438PANTHER:PTHR10438:SF293SUPFAM:SSF52833TIGRFAMs:TIGR01068InterPro:ThioredoxinInterPro:Thioredoxin-like_sf
InterPro:Thioredoxin_CSInterPro:Thioredoxin_domainUniParc:UPI000233A790SEG:seg::
Description
hypothetical protein
Coordinates
chr6:+:2220717..2222691
Molecular Weight (calculated)
12978.9 Da
IEP (calculated)
5.713
GRAVY (calculated)
0.038
Length
117 amino acids
Sequence
(BLAST)
001: MAEEGQVIGV HSVEEWKEHL KKGEESKKLI VVDFTASWCG PCRFIAPILA EFAKKLPNVT FLKVDVDELE TVSKEWGIEA MPTFLFLKEG KLVDKVVGAK
101: KEELQLTIAK HAAIAAA
Best Arabidopsis Sequence Match ( AT3G51030.1 )
(BLAST)
001: MASEEGQVIA CHTVETWNEQ LQKANESKTL VVVDFTASWC GPCRFIAPFF ADLAKKLPNV LFLKVDTDEL KSVASDWAIQ AMPTFMFLKE GKILDKVVGA
101: KKDELQSTIA KHLA
Arabidopsis Description
TRX1Thioredoxin H1 [Source:UniProtKB/Swiss-Prot;Acc:P29448]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.