CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH40285	Soybean	plastid	94.41	93.37
VIT_04s0023g00740.t01	Wine grape	plastid	64.8	67.44
AT3G02730.1	Thale cress	plastid	63.13	63.48
AT5G16400.1	Thale cress	plastid	64.25	62.16
Solyc05g056300.2.1	Tomato	plastid	63.13	62.09
PGSC0003DMT400059966	Potato	cytosol, extracellular, plastid	63.13	62.09
Zm00001d024835_P001	Maize	plastid	61.45	61.11
GSMUA_Achr8P01040_001	Banana	plastid	60.34	60.34
CDY53739	Canola	plastid	60.89	60.22
Bra021417.1-P	Field mustard	plastid	60.89	59.89
CDY69984	Canola	plastid	60.89	58.6
CDY51539	Canola	plastid	58.1	57.78
Bra040596.1-P	Field mustard	plastid	58.1	57.46
Bra023564.1-P	Field mustard	plastid	59.78	57.22
TraesCS3B01G453600.1	Wheat	plastid	60.34	57.14
CDY28704	Canola	plastid	56.98	56.67
KXG21303	Sorghum	plastid	60.34	56.25
CDY38116	Canola	plastid	58.66	56.15
Os01t0913000-01	Rice	plastid	58.66	56.15
TraesCS3A01G418400.1	Wheat	plastid	59.22	56.08
Zm00001d010871_P001	Maize	plastid	57.54	51.24
GSMUA_Achr11P...	Banana	mitochondrion	40.78	45.34
KRH05879	Soybean	endoplasmic reticulum	26.26	38.21
KRH15131	Soybean	cytosol, nucleus	25.14	37.82
KRH28739	Soybean	cytosol	24.02	35.83
KRH51778	Soybean	endoplasmic reticulum	22.91	35.04
KRH76717	Soybean	endoplasmic reticulum, nucleus	22.91	34.17
KRH61100	Soybean	cytosol	21.23	32.48
KRH01124	Soybean	endoplasmic reticulum	24.02	32.33
KRH22228	Soybean	cytosol	21.23	31.15
KRH74754	Soybean	cytosol	21.79	30.95
KRH74753	Soybean	cytosol	21.23	30.65
KRH45834	Soybean	cytosol, plastid	20.67	30.58
KRH27111	Soybean	nucleus	21.23	30.16
KRH01123	Soybean	cytosol	20.67	30.08
KRH69383	Soybean	cytosol	21.23	29.92
KRH00477	Soybean	cytosol	22.91	29.5
KRH09556	Soybean	cytosol	22.35	29.2
KRG99185	Soybean	cytosol, plastid	19.55	28.93
KRH69384	Soybean	cytosol	20.67	28.91
KRH40138	Soybean	cytosol, plastid	20.11	28.8
KRH21649	Soybean	cytosol, plastid	20.11	28.8
KRH10686	Soybean	cytosol	19.55	28.23
KRH74748	Soybean	plastid	21.23	27.54
KRH40137	Soybean	endoplasmic reticulum	20.11	27.48
KRH40136	Soybean	endoplasmic reticulum	24.02	27.39
KRH25890	Soybean	nucleus	18.44	26.19
KRH64869	Soybean	cytosol	22.35	26.14
KRH01119	Soybean	cytosol	20.11	25.71
KRH33304	Soybean	cytosol	17.88	25.4
KRH55615	Soybean	cytosol	17.88	25.4
KRH69387	Soybean	plastid	19.55	25.36
KRH40706	Soybean	mitochondrion	22.35	23.67

Protein Annotations

MapMan:10.5.4	EntrezGene:100306555	Gene3D:3.40.30.10	EMBL:ACUP02011483	EMBL:BT090708	UniProt:C6SZV5
EnsemblPlantsGene:GLYMA_18G243200	GO:GO:0003674	GO:GO:0003824	GO:GO:0004791	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006662	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0015035	GO:GO:0016671	GO:GO:0019725	GO:GO:0034599	GO:GO:0045454
GO:GO:0047134	GO:GO:0055114	GO:GO:0098869	InterPro:IPR013766	EnsemblPlants:KRH00940	ProteinID:KRH00940
ProteinID:KRH00940.1	PFAM:PF00085	PRINTS:PR00421	ScanProsite:PS00194	PFscan:PS51352	PANTHER:PTHR10438
PANTHER:PTHR10438:SF258	SUPFAM:SSF52833	InterPro:Thioredoxin	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_CS	InterPro:Thioredoxin_domain
UniParc:UPI0001B151A4	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr18:+:53146508..53149688

Molecular Weight (calculated)

19609.8 Da

IEP (calculated)

8.984

GRAVY (calculated)

0.003

Length

179 amino acids

Sequence
(BLAST)

001: MALNLCISPK FKWVPSLDSA SYSLRPSLGS CFGNINIASV SLSTTRSLSL RRSGSVSVRS SLETAGPTVT VGQVTEVNKD TFWPIVKAAG DKTVVLDMYT
101: QWCGPCKVMA PKFQELSEKY LDVVFLKLDC NQDNRPLAIE LGIKVVPTFK ILKDNKVVKE VTGAKYDDLV DAIDKVRSS

Best Arabidopsis Sequence Match ( AT5G16400.1 )
(BLAST)

001: MPLSLRLAPS PTSFRYSPIT STGAGGFSPV KQHCRIPNSG VATKIGFCSG GGGVLDSGRR IGSCVVRCSL ETVNVTVGQV TEVDKDTFWP IVKAAGDKIV
101: VLDMYTQWCG PCKVIAPKYK ELSEKYQDMV FLKLDCNQDN KPLAKELGIR VVPTFKILKD NKVVKEVTGA KYEDLLAAIE AARSG

Arabidopsis Description

TRXF2TRXF2 [Source:UniProtKB/TrEMBL;Acc:A0A178UDV9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.