Factsheet for VIT_04s0023g00740.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH00940	Soybean	nucleus, plastid	67.44	64.8
Os01t0913000-01	Rice	plastid	69.77	64.17
KRH40285	Soybean	plastid	65.7	62.43
GSMUA_Achr8P01040_001	Banana	plastid	63.95	61.45
AT3G02730.1	Thale cress	plastid	63.37	61.24
Zm00001d024835_P001	Maize	plastid	63.95	61.11
TraesCS3A01G418400.1	Wheat	plastid	65.7	59.79
Solyc05g056300.2.1	Tomato	plastid	62.79	59.34
PGSC0003DMT400059966	Potato	cytosol, extracellular, plastid	62.79	59.34
CDY53739	Canola	plastid	62.21	59.12
Bra021417.1-P	Field mustard	plastid	62.21	58.79
TraesCS3B01G453600.1	Wheat	plastid	64.53	58.73
AT5G16400.1	Thale cress	plastid	62.21	57.84
CDY51539	Canola	plastid	58.72	56.11
KXG21303	Sorghum	plastid	62.21	55.73
Bra040596.1-P	Field mustard	plastid	58.14	55.25
CDY28704	Canola	plastid	57.56	55.0
CDY69984	Canola	plastid	58.72	54.3
Zm00001d010871_P001	Maize	plastid	62.21	53.23
Bra023564.1-P	Field mustard	plastid	57.56	52.94
CDY38116	Canola	plastid	56.98	52.41
GSMUA_Achr11P...	Banana	mitochondrion	41.28	44.1
VIT_18s0001g13250.t01	Wine grape	cytosol	23.26	35.09
VIT_04s0023g02700.t01	Wine grape	cytosol	22.67	33.91
VIT_01s0026g01460.t01	Wine grape	cytosol	22.67	32.23
VIT_14s0066g02560.t01	Wine grape	cytosol	21.51	27.21
VIT_19s0014g05090.t01	Wine grape	cytosol	18.6	25.4
VIT_00s0532g00030.t01	Wine grape	cytosol	18.6	25.4
VIT_18s0001g13240.t01	Wine grape	cytosol	23.26	25.32
VIT_08s0040g00020.t01	Wine grape	cytosol	20.35	25.18

Protein Annotations

MapMan:10.5.4	EntrezGene:100261565	wikigene:100261565	Gene3D:3.40.30.10	ProteinID:CBI17610	ProteinID:CBI17610.3
UniProt:D7SPN1	EMBL:FN594959	GO:GO:0003674	GO:GO:0003824	GO:GO:0004791	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006662	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0015035	GO:GO:0016671	GO:GO:0019725	GO:GO:0034599
GO:GO:0045454	GO:GO:0047134	GO:GO:0055114	GO:GO:0098869	InterPro:IPR013766	EntrezGene:LOC100261565
wikigene:LOC100261565	PFAM:PF00085	PRINTS:PR00421	ScanProsite:PS00194	PFscan:PS51257	PFscan:PS51352
PANTHER:PTHR10438	PANTHER:PTHR10438:SF258	SUPFAM:SSF52833	TIGR:TC56341	InterPro:Thioredoxin	InterPro:Thioredoxin-like_sf
InterPro:Thioredoxin_CS	InterPro:Thioredoxin_domain	UniParc:UPI00015CA464	ArrayExpress:VIT_04s0023g00740	EnsemblPlantsGene:VIT_04s0023g00740	EnsemblPlants:VIT_04s0023g00740.t01
unigene:Vvi.3284	RefSeq:XP_002277021	RefSeq:XP_002277021.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr4:+:17127806..17132341

Molecular Weight (calculated)

18590.6 Da

IEP (calculated)

9.601

GRAVY (calculated)

0.047

Length

172 amino acids

Sequence
(BLAST)

001: MALRLSLSPP PIRSSASPSW AAPHSIAISC SSSSSVGVSV PTQEKRRARV VVRSSSIDTA EAVVGQVTEV NKDTFWPIVK AAGDKAVVLD MYTQWCGPCK
101: VMAPKFQELS GKYLDVVFLK LDCNQDNKTL AKELGIRVVP TFKILKDSKI VKEVTGAKLD DLVVAIETVR SS

Best Arabidopsis Sequence Match ( AT5G16400.1 )
(BLAST)

001: MPLSLRLAPS PTSFRYSPIT STGAGGFSPV KQHCRIPNSG VATKIGFCSG GGGVLDSGRR IGSCVVRCSL ETVNVTVGQV TEVDKDTFWP IVKAAGDKIV
101: VLDMYTQWCG PCKVIAPKYK ELSEKYQDMV FLKLDCNQDN KPLAKELGIR VVPTFKILKD NKVVKEVTGA KYEDLLAAIE AARSG

Arabidopsis Description

TRXF2TRXF2 [Source:UniProtKB/TrEMBL;Acc:A0A178UDV9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.