Factsheet for Zm00001d010871_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 20089766
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d024835_P001	Maize	plastid	75.62	84.44
KXG21303	Sorghum	plastid	78.11	81.77
Os01t0913000-01	Rice	plastid	64.68	69.52
TraesCS3B01G453600.1	Wheat	plastid	64.18	68.25
TraesCS3A01G418400.1	Wheat	plastid	63.18	67.2
VIT_04s0023g00740.t01	Wine grape	plastid	53.23	62.21
GSMUA_Achr8P01040_001	Banana	plastid	52.24	58.66
KRH00940	Soybean	nucleus, plastid	51.24	57.54
KRH40285	Soybean	plastid	50.75	56.35
Solyc05g056300.2.1	Tomato	plastid	50.75	56.04
AT5G16400.1	Thale cress	plastid	51.24	55.68
PGSC0003DMT400059966	Potato	cytosol, extracellular, plastid	49.75	54.95
Bra021417.1-P	Field mustard	plastid	49.75	54.95
CDY53739	Canola	plastid	49.25	54.7
AT3G02730.1	Thale cress	plastid	48.26	54.49
CDY51539	Canola	plastid	47.76	53.33
Bra040596.1-P	Field mustard	plastid	47.26	52.49
CDY28704	Canola	plastid	46.77	52.22
CDY69984	Canola	plastid	47.76	51.61
Bra023564.1-P	Field mustard	plastid	47.26	50.8
CDY38116	Canola	plastid	46.27	49.73
GSMUA_Achr11P...	Banana	mitochondrion	32.84	40.99
Zm00001d038652_P003	Maize	cytosol	22.39	35.16
Zm00001d019034_P001	Maize	cytosol, extracellular, mitochondrion	20.9	34.43
Zm00001d007800_P001	Maize	cytosol	19.4	32.5
Zm00001d034491_P001	Maize	plastid	18.41	27.82
Zm00001d037499_P001	Maize	cytosol	18.41	27.82
Zm00001d019035_P001	Maize	cytosol	17.41	27.78
Zm00001d039710_P004	Maize	cytosol	19.4	27.08
Zm00001d026368_P001	Maize	cytosol, extracellular	14.43	22.48
Zm00001d038486_P002	Maize	cytosol	14.43	20.28

Protein Annotations

MapMan:10.5.4	Gene3D:3.40.30.10	ProteinID:AQK95151.1	UniProt:B4FB80	EMBL:BT034368	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005623	GO:GO:0006662	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0015035	GO:GO:0019725	GO:GO:0045454	GO:GO:0055114	InterPro:IPR013766
PFAM:PF00085	PRINTS:PR00421	ScanProsite:PS00194	PFscan:PS51352	PANTHER:PTHR10438	PANTHER:PTHR10438:SF258
SUPFAM:SSF52833	InterPro:Thioredoxin	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_CS	InterPro:Thioredoxin_domain	UniParc:UPI00017B68B0
EnsemblPlantsGene:Zm00001d010871	EnsemblPlants:Zm00001d010871_P001	EnsemblPlants:Zm00001d010871_T001	SEG:seg	:	:

Description

Thioredoxin F2 chloroplastic

Coordinates

chr8:+:131613133..131614413

Molecular Weight (calculated)

20975.5 Da

IEP (calculated)

8.969

GRAVY (calculated)

0.118

Length

201 amino acids

Sequence
(BLAST)

001: MALRLPISST HGLASSPAPI SSTTTCRPAA ASGSLIPPAA LVAVAIRWAS ASASQKRGLL LTTARGGGVL APVRSSGIET TTTSVGAEAV TGQVTEVNKD
101: TFWPIVEAAG DKVVVLDMYT EWCGPCKVMA PKFQEMSEKN LDVVFLKLDC NQDNKPLAKE LGIKVVPTFK ILKGGKVVKE VTGAKIDELA EAIEIANKKS
201: G

Best Arabidopsis Sequence Match ( AT5G16400.1 )
(BLAST)

001: MPLSLRLAPS PTSFRYSPIT STGAGGFSPV KQHCRIPNSG VATKIGFCSG GGGVLDSGRR IGSCVVRCSL ETVNVTVGQV TEVDKDTFWP IVKAAGDKIV
101: VLDMYTQWCG PCKVIAPKYK ELSEKYQDMV FLKLDCNQDN KPLAKELGIR VVPTFKILKD NKVVKEVTGA KYEDLLAAIE AARSG

Arabidopsis Description

TRXF2TRXF2 [Source:UniProtKB/TrEMBL;Acc:A0A178UDV9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.