Factsheet for Zm00001d019034_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, extracellular, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, mitochondrion
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 20408568
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU88584	Sorghum	cytosol	80.33	83.05
Zm00001d007800_P001	Maize	cytosol	80.33	81.67
Os07t0186000-02	Rice	extracellular	67.21	67.21
TraesCS2A01G243200.1	Wheat	cytosol, golgi, plastid	59.02	61.02
TraesCS2B01G260500.1	Wheat	extracellular	43.44	55.79
TraesCS2D01G244400.1	Wheat	cytosol	57.38	51.47
Zm00001d019035_P001	Maize	cytosol	52.46	50.79
Zm00001d038652_P003	Maize	cytosol	50.82	48.44
Zm00001d034491_P001	Maize	plastid	46.72	42.86
Os12t0280050-00	Rice	cytosol	37.7	37.4
Zm00001d037499_P001	Maize	cytosol	36.89	33.83
Zm00001d026368_P001	Maize	cytosol, extracellular	33.61	31.78
Zm00001d039710_P004	Maize	cytosol	36.89	31.25
Zm00001d024835_P001	Maize	plastid	33.61	22.78
Zm00001d010871_P001	Maize	plastid	34.43	20.9
Zm00001d038486_P002	Maize	cytosol	23.77	20.28

Protein Annotations

MapMan:10.6.1	MapMan:18.7.2	Gene3D:3.40.30.10	UniProt:B4FH44	EMBL:BT036432	EMBL:EU952337
EMBL:EU952340	EMBL:EU953481	EMBL:EU955256	EMBL:EU958401	EMBL:EU958761	EMBL:EU959119
EMBL:EU973767	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005623	GO:GO:0006662
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0015035	GO:GO:0019725	GO:GO:0045454
GO:GO:0055114	InterPro:IPR013766	ProteinID:ONM51928.1	PFAM:PF00085	PIRSF:PIRSF000077	PRINTS:PR00421
ScanProsite:PS00194	PFscan:PS51352	PANTHER:PTHR10438	PANTHER:PTHR10438:SF370	SUPFAM:SSF52833	InterPro:Thioredoxin
InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_CS	InterPro:Thioredoxin_domain	UniParc:UPI0000D6F0FD	EnsemblPlantsGene:Zm00001d019034	EnsemblPlants:Zm00001d019034_P001
EnsemblPlants:Zm00001d019034_T001	SEG:seg	:	:	:	:

Description

thioredoxin h homolog2 thioredoxin h homolog2

Coordinates

chr7:-:13647277..13649821

Molecular Weight (calculated)

13082.8 Da

IEP (calculated)

6.669

GRAVY (calculated)

0.168

Length

122 amino acids

Sequence
(BLAST)

001: MASEQGVVIA CHSKAEFDAH MTKAQEAGKL VVIDFTAAWC GPCRAIAPLF VEHAKKFTQV VFLKVDVDEV KEVTAAYEVE AMPTFHFVKN GKTVATIVGA
101: RKDELLAQIE KHAAPAPASA SA

Best Arabidopsis Sequence Match ( AT3G51030.1 )
(BLAST)

001: MASEEGQVIA CHTVETWNEQ LQKANESKTL VVVDFTASWC GPCRFIAPFF ADLAKKLPNV LFLKVDTDEL KSVASDWAIQ AMPTFMFLKE GKILDKVVGA
101: KKDELQSTIA KHLA

Arabidopsis Description

TRX1Thioredoxin H1 [Source:UniProtKB/Swiss-Prot;Acc:P29448]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.