Factsheet for TraesCS2A01G243200.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, plastid, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi, plastid
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 22160430
golgi: 23128297

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms, gfp PMID: 23128297 doi

M Suliman, AL Chateigner-Boutin, M Francin-Allami, A Partier, B Bouchet, J Salse, C Pont, J Marion, H Rogniaux, D Tessier, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G260500.1	Wheat	extracellular	74.58	92.63
TraesCS2D01G244400.1	Wheat	cytosol	98.31	85.29
Os07t0186000-02	Rice	extracellular	76.27	73.77
OQU88584	Sorghum	cytosol	66.1	66.1
Zm00001d007800_P001	Maize	cytosol	66.95	65.83
Zm00001d019034_P001	Maize	cytosol, extracellular, mitochondrion	61.02	59.02
EER98090	Sorghum	cytosol	47.46	49.56
KXG34558	Sorghum	cytosol	50.85	48.78
TraesCS1A01G325600.1	Wheat	cytosol	53.39	48.46
Zm00001d019035_P001	Maize	cytosol	51.69	48.41
TraesCS7A01G562100.1	Wheat	cytosol	39.83	44.34
TraesCS5A01G448200.1	Wheat	cytosol	46.61	41.98
Os12t0280050-00	Rice	cytosol	40.68	39.02
TraesCS1A01G112400.1	Wheat	cytosol	40.68	36.64
TraesCS1A01G301500.1	Wheat	cytosol	31.36	25.87
TraesCS2A01G480300.1	Wheat	cytosol	28.81	24.46
TraesCS3A01G418400.1	Wheat	plastid	30.51	19.05

Protein Annotations

MapMan:10.6.1	MapMan:18.7.2	Gene3D:3.40.30.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0006662
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0015035	GO:GO:0019725	GO:GO:0045454
InterPro:IPR013766	PFAM:PF00085	PIRSF:PIRSF000077	PRINTS:PR00421	ScanProsite:PS00194	PFscan:PS51352
PANTHER:PTHR10438	PANTHER:PTHR10438:SF293	SUPFAM:SSF52833	InterPro:Thioredoxin	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_CS
InterPro:Thioredoxin_domain	EnsemblPlantsGene:TraesCS2A01G243200	EnsemblPlants:TraesCS2A01G243200.1	TIGR:cd02947	:	:

Description

No Description!

Coordinates

chr2A:+:341625310..341627889

Molecular Weight (calculated)

12694.3 Da

IEP (calculated)

5.161

GRAVY (calculated)

0.156

Length

118 amino acids

Sequence
(BLAST)

001: MAAEEGAVIA CHTKQEFDTH MANGKETGKL VIIDFTASWC GPCRVIAPVF AEYAKKFPGA IFLKVDVDEL KDVAEAYNVE AMPTFLFIKD GAKVDTVVGG
101: RKDDIHTKIV ALMGSASA

Best Arabidopsis Sequence Match ( AT1G19730.1 )
(BLAST)

001: MAAEEGQVIG CHTNDVWTVQ LDKAKESNKL IVIDFTASWC PPCRMIAPIF NDLAKKFMSS AIFFKVDVDE LQSVAKEFGV EAMPTFVFIK AGEVVDKLVG
101: ANKEDLQAKI VKHTGVTTA

Arabidopsis Description

TRX4Thioredoxin H4 [Source:UniProtKB/Swiss-Prot;Acc:Q39239]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.