Factsheet for Os07t0186000-02

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 1
plastid 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

extracellular: 18372294
extracellular: 19036832
extracellular: 19038476
extracellular: 26072143
plasma membrane: 27800704
plastid: 27992503

msms PMID: 26072143 doi

B Du, Z Wei, Z Wang, X Wang, X Peng, B Du, R Chen, L Zhu, G He

State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, 430072, China., State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, 430072, China. Electronic address: gche@whu.edu.cn.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 19036832 doi

L Zhang, LH Tian, JF Zhao, Y Song, CJ Zhang, Y Guo

Institute of Molecular and Cell Biology, Hebei Normal University, Shijiazhuang 050016, China.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 18372294 doi

T Aki, M Shigyo, R Nakano, T Yoneyama, S Yanagisawa

Department of Applied Biological Chemistry, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo, 113-8657 Japan.

msms PMID: 19038476 doi

XY Chen, ST Kim, WK Cho, Y Rim, S Kim, SW Kim, KY Kang, ZY Park, JY Kim

Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju 660-701, Republic of Korea.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G243200.1	Wheat	cytosol, golgi, plastid	73.77	76.27
TraesCS2B01G260500.1	Wheat	extracellular	57.38	73.68
Zm00001d007800_P001	Maize	cytosol	69.67	70.83
OQU88584	Sorghum	cytosol	67.21	69.49
Zm00001d019034_P001	Maize	cytosol, extracellular, mitochondrion	67.21	67.21
TraesCS2D01G244400.1	Wheat	cytosol	72.13	64.71
EER98090	Sorghum	cytosol	51.64	55.75
KXG34558	Sorghum	cytosol	53.28	52.85
Zm00001d019035_P001	Maize	cytosol	53.28	51.59
Os03t0800700-01	Rice	plastid	44.26	40.3
Os07t0190800-01	Rice	cytosol	45.08	39.86
Os12t0280050-00	Rice	cytosol	38.52	38.21
Os05t0480200-01	Rice	cytosol	40.16	36.3
Os01t0168200-01	Rice	plasma membrane	38.52	35.88
Os05t0169000-01	Rice	cytosol	36.89	34.09
Os04t0629500-01	Rice	cytosol	31.15	28.57
Os01t0913000-01	Rice	plastid	33.61	21.93

Protein Annotations

MapMan:10.6.1	MapMan:18.7.2	PDB:1WMJ	Gene3D:3.40.30.10	EntrezGene:4342593	EMBL:AK059196
EMBL:AK121423	ProteinID:BAA05546.1	ProteinID:BAC79928.1	ProteinID:BAD30186.1	ProteinID:BAF20983.1	ProteinID:BAT00373.1
EMBL:D21836	ProteinID:EAZ38949.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004791	GO:GO:0004857
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006662	GO:GO:0006810
GO:GO:0006950	GO:GO:0006979	GO:GO:0008150	GO:GO:0008152	GO:GO:0009409	GO:GO:0009628
GO:GO:0009987	GO:GO:0010497	GO:GO:0015035	GO:GO:0016671	GO:GO:0019725	GO:GO:0030234
GO:GO:0034599	GO:GO:0043086	GO:GO:0045454	GO:GO:0047134	GO:GO:0055114	GO:GO:0098869
InterPro:IPR013766	EnsemblPlantsGene:Os07g0186000	EnsemblPlants:Os07t0186000-02	PFAM:PF00085	PIRSF:PIRSF000077	PRINTS:PR00421
ScanProsite:PS00194	PFscan:PS51352	PANTHER:PTHR10438	PANTHER:PTHR10438:SF293	UniProt:Q0D840	SUPFAM:SSF52833
InterPro:Thioredoxin	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_CS	InterPro:Thioredoxin_domain	UniParc:UPI0000136E05	RefSeq:XP_015647572.1

Description

THIOREDOXIN H-TYPEH-type thioredoxin, Regulation of the apoplastic reactive oxygen species, Stress response (Os07t0186000-02)

Coordinates

chr7:-:4574319..4576229

Molecular Weight (calculated)

13156.8 Da

IEP (calculated)

4.941

GRAVY (calculated)

0.047

Length

122 amino acids

Sequence
(BLAST)

001: MAAEEGVVIA CHNKDEFDAQ MTKAKEAGKV VIIDFTASWC GPCRFIAPVF AEYAKKFPGA VFLKVDVDEL KEVAEKYNVE AMPTFLFIKD GAEADKVVGA
101: RKDDLQNTIV KHVGATAASA SA

Best Arabidopsis Sequence Match ( AT3G51030.1 )
(BLAST)

001: MASEEGQVIA CHTVETWNEQ LQKANESKTL VVVDFTASWC GPCRFIAPFF ADLAKKLPNV LFLKVDTDEL KSVASDWAIQ AMPTFMFLKE GKILDKVVGA
101: KKDELQSTIA KHLA

Arabidopsis Description

TRX1Thioredoxin H1 [Source:UniProtKB/Swiss-Prot;Acc:P29448]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.