Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 4
- golgi 4
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G243200.1 | Wheat | cytosol, golgi, plastid | 92.63 | 74.58 |
| TraesCS2D01G244400.1 | Wheat | cytosol | 93.68 | 65.44 |
| Os07t0186000-02 | Rice | extracellular | 73.68 | 57.38 |
| Zm00001d007800_P001 | Maize | cytosol | 60.0 | 47.5 |
| OQU88584 | Sorghum | cytosol | 58.95 | 47.46 |
| Zm00001d019034_P001 | Maize | cytosol, extracellular, mitochondrion | 55.79 | 43.44 |
| TraesCS1B01G338800.1 | Wheat | cytosol, golgi, plastid, unclear | 55.79 | 41.73 |
| TraesCS1B01G339000.1 | Wheat | cytosol | 49.47 | 39.83 |
| Os12t0280050-00 | Rice | cytosol | 47.37 | 36.59 |
| TraesCS5B01G452700.1 | Wheat | cytosol, golgi, unclear | 47.37 | 34.35 |
| EER98090 | Sorghum | cytosol | 40.0 | 33.63 |
| KXG34558 | Sorghum | cytosol | 42.11 | 32.52 |
| Zm00001d019035_P001 | Maize | cytosol | 41.05 | 30.95 |
| TraesCS1B01G132600.1 | Wheat | cytosol | 42.11 | 30.53 |
| TraesCS1B01G311300.1 | Wheat | cytosol | 34.74 | 23.08 |
| TraesCS2B01G505100.1 | Wheat | cytosol | 32.63 | 22.3 |
| TraesCS3B01G453600.1 | Wheat | plastid | 30.53 | 15.34 |
Protein Annotations
| MapMan:10.6.1 | Gene3D:3.40.30.10 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006662 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0015035 | GO:GO:0019725 | GO:GO:0045454 | InterPro:IPR013766 |
| PFAM:PF00085 | PIRSF:PIRSF000077 | PRINTS:PR00421 | ScanProsite:PS00194 | PFscan:PS51352 | PANTHER:PTHR10438 |
| PANTHER:PTHR10438:SF293 | SUPFAM:SSF52833 | InterPro:Thioredoxin | InterPro:Thioredoxin-like_sf | InterPro:Thioredoxin_CS | InterPro:Thioredoxin_domain |
| EnsemblPlantsGene:TraesCS2B01G260500 | EnsemblPlants:TraesCS2B01G260500.1 | TIGR:cd02947 | : | : | : |
Description
No Description!
Coordinates
chr2B:-:329138157..329138524
Molecular Weight (calculated)
10394.7 Da
IEP (calculated)
5.019
GRAVY (calculated)
0.442
Length
95 amino acids
Sequence
(BLAST)
(BLAST)
1: MYFFALQVII DFTASWCGPC RVIAPVFAEY AKKFPGAIFL KVDVDELKDV AEAYNVEAMP TFLFIKDGAK VDTVVGGRKD DIHTKIVALM GSASA
001: MASEEGQVIA CHTVETWNEQ LQKANESKTL VVVDFTASWC GPCRFIAPFF ADLAKKLPNV LFLKVDTDEL KSVASDWAIQ AMPTFMFLKE GKILDKVVGA
101: KKDELQSTIA KHLA
101: KKDELQSTIA KHLA
Arabidopsis Description
TRX1Thioredoxin H1 [Source:UniProtKB/Swiss-Prot;Acc:P29448]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.