Factsheet for Solyc05g056300.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400059966	Potato	cytosol, extracellular, plastid	96.15	96.15
KRH00940	Soybean	nucleus, plastid	62.09	63.13
VIT_04s0023g00740.t01	Wine grape	plastid	59.34	62.79
KRH40285	Soybean	plastid	60.99	61.33
AT3G02730.1	Thale cress	plastid	58.79	60.11
Zm00001d024835_P001	Maize	plastid	56.59	57.22
CDY53739	Canola	plastid	56.59	56.91
Bra021417.1-P	Field mustard	plastid	56.59	56.59
AT5G16400.1	Thale cress	plastid	57.14	56.22
GSMUA_Achr8P01040_001	Banana	plastid	54.95	55.87
TraesCS3B01G453600.1	Wheat	plastid	57.14	55.03
TraesCS3A01G418400.1	Wheat	plastid	56.59	54.5
CDY51539	Canola	plastid	53.85	54.44
Bra040596.1-P	Field mustard	plastid	53.85	54.14
CDY28704	Canola	plastid	53.3	53.89
Os01t0913000-01	Rice	plastid	54.95	53.48
KXG21303	Sorghum	plastid	54.95	52.08
Zm00001d010871_P001	Maize	plastid	56.04	50.75
CDY69984	Canola	plastid	51.1	50.0
CDY38116	Canola	plastid	50.55	49.2
Bra023564.1-P	Field mustard	plastid	50.55	49.2
Solyc02g084710.2.1	Tomato	extracellular	24.18	37.29
GSMUA_Achr11P...	Banana	mitochondrion	30.77	34.78
Solyc04g080850.2.1	Tomato	extracellular	23.08	34.15
Solyc04g005810.2.1	Tomato	plastid	22.53	30.83
Solyc05g006870.2.1	Tomato	cytosol	21.98	29.63
Solyc05g006830.2.1	Tomato	cytosol, plastid	20.88	28.15
Solyc05g006860.2.1	Tomato	cytosol	20.88	28.15
Solyc03g095500.2.1	Tomato	cytosol	19.78	25.9
Solyc02g079960.2.1	Tomato	cytosol	17.58	25.6
Solyc03g118560.1.1	Tomato	cytosol	16.48	24.59
Solyc05g006850.2.1	Tomato	cytosol	18.13	24.44
Solyc09g015820.2.1	Tomato	plastid	20.33	24.03
Solyc02g087630.2.1	Tomato	plastid	20.33	21.89

Protein Annotations

MapMan:10.5.4	Gene3D:3.40.30.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004791	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006662	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0015035	GO:GO:0016671	GO:GO:0019725	GO:GO:0034599
GO:GO:0045454	GO:GO:0047134	GO:GO:0055114	GO:GO:0098869	InterPro:IPR013766	UniProt:K4C2V4
PFAM:PF00085	PRINTS:PR00421	ScanProsite:PS00194	PFscan:PS51352	PANTHER:PTHR10438	PANTHER:PTHR10438:SF258
SUPFAM:SSF52833	EnsemblPlantsGene:Solyc05g056300.2	EnsemblPlants:Solyc05g056300.2.1	InterPro:Thioredoxin	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_CS
InterPro:Thioredoxin_domain	UniParc:UPI0002765706	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr5:-:65641347..65643915

Molecular Weight (calculated)

19888.1 Da

IEP (calculated)

9.554

GRAVY (calculated)

-0.037

Length

182 amino acids

Sequence
(BLAST)

001: MALQVQVNQV PLKSSMAPVP AQSASSSWRF NKQSVVCVAG DYGFSSRVLR NRGLSLRVKC SSSDATVTTT TVTVGQVTEV CKDTFWPIVE AAGEKTVVVD
101: MYTQWCGPCK VIAPKFQELS KKYNDVVFLK LDCNQDNRPL AKELGIKVVP TFKILKNNKI VKEVTGAKLD DLVAAIEGVR SS

Best Arabidopsis Sequence Match ( AT3G02730.1 )
(BLAST)

001: MPLSLRLSPS PTALSPTTGG FGPSRKQCRI PYSGVPTTKI GFCSLDSRKR GDSSVVRCSL ETVNVSVGQV TEVDKDTFWP IVKAAGEKLV VLDMYTQWCG
101: PCKVIAPKYK ALSEKYDDVV FLKLDCNPDN RPLAKELGIR VVPTFKILKD NKVVKEVTGA KYDDLVAAIE TARSAASG

Arabidopsis Description

TRXF1TRXF1 [Source:UniProtKB/TrEMBL;Acc:A0A178VBJ7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.