Factsheet for Solyc05g006850.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400045460	Potato	cytosol	40.74	80.88
Solyc05g006870.2.1	Tomato	cytosol	71.11	71.11
Solyc05g006860.2.1	Tomato	cytosol	69.63	69.63
Solyc05g006830.2.1	Tomato	cytosol, plastid	69.63	69.63
Solyc04g005810.2.1	Tomato	plastid	60.0	60.9
VIT_01s0026g01460.t01	Wine grape	cytosol	51.85	57.85
KRH74754	Soybean	cytosol	52.59	56.35
KRH74753	Soybean	cytosol	51.11	55.65
KRH69384	Soybean	cytosol	51.11	53.91
KRH69383	Soybean	cytosol	50.37	53.54
KRH45834	Soybean	cytosol, plastid	45.93	51.24
KRG99185	Soybean	cytosol, plastid	45.93	51.24
Solyc04g080850.2.1	Tomato	extracellular	42.22	46.34
GSMUA_Achr9P10960_001	Banana	mitochondrion, plastid	41.48	45.16
Solyc02g084710.2.1	Tomato	extracellular	37.04	42.37
KRH69387	Soybean	plastid	41.48	40.58
GSMUA_Achr2P17710_001	Banana	cytosol	37.78	40.16
KRH74748	Soybean	plastid	40.74	39.86
Os07t0190800-01	Rice	cytosol	40.0	39.13
EER90722	Sorghum	cytosol	38.52	39.1
CDY27290	Canola	cytosol	36.3	38.28
Bra027837.1-P	Field mustard	cytosol	36.3	38.28
CDY45144	Canola	cytosol	36.3	38.28
TraesCS5A01G448200.1	Wheat	cytosol	37.04	38.17
TraesCS5B01G452700.1	Wheat	cytosol, golgi, unclear	37.04	38.17
HORVU5Hr1G107210.1	Barley	cytosol	37.04	38.17
TraesCS5D01G454800.1	Wheat	cytosol	37.04	38.17
AT1G59730.1	Thale cress	cytosol	36.3	37.98
Zm00001d034491_P001	Maize	plastid	37.04	37.59
Bra017898.1-P	Field mustard	cytosol	35.56	37.5
CDY30901	Canola	cytosol	35.56	37.5
Os03t0800700-01	Rice	plastid	37.04	37.31
Solyc02g079960.2.1	Tomato	cytosol	33.33	36.0
CDY23543	Canola	cytosol	37.04	35.71
Bra003976.1-P	Field mustard	cytosol	37.04	35.46
CDY48387	Canola	cytosol	37.04	35.46
GSMUA_Achr7P16980_001	Banana	cytosol	26.67	34.95
HORVU5Hr1G107170.1	Barley	cytosol	37.04	34.48
AT1G69880.1	Thale cress	plastid	37.78	34.46
CDY38768	Canola	cytosol, plastid	38.52	34.44
CDY11645	Canola	cytosol, plastid	38.52	34.44
Bra016258.1-P	Field mustard	cytosol	37.78	33.77
Solyc02g087630.2.1	Tomato	plastid	42.22	33.73
Bra003977.1-P	Field mustard	cytosol	37.04	33.56
CDY23544	Canola	cytosol	36.3	33.11
Solyc03g118560.1.1	Tomato	cytosol	29.63	32.79
CDY48388	Canola	cytosol	35.56	32.65
CDY03743	Canola	extracellular	18.52	29.07
GSMUA_Achr7P12220_001	Banana	cytosol	24.44	28.45
CDY04457	Canola	cytosol	20.0	27.55
Solyc03g095500.2.1	Tomato	cytosol	26.67	25.9
Solyc09g015820.2.1	Tomato	plastid	28.15	24.68
HORVU6Hr1G018190.1	Barley	mitochondrion	14.81	21.51
Solyc05g056300.2.1	Tomato	plastid	24.44	18.13
CDY11641	Canola	plastid	17.78	11.59

Protein Annotations

MapMan:10.6.1	Gene3D:3.40.30.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004791	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006662	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0015035	GO:GO:0016671	GO:GO:0019725	GO:GO:0034599
GO:GO:0045454	GO:GO:0047134	GO:GO:0055114	GO:GO:0098869	InterPro:IPR013766	UniProt:K4BWL1
PFAM:PF00085	PIRSF:PIRSF000077	PRINTS:PR00421	ScanProsite:PS00194	PFscan:PS51352	PANTHER:PTHR10438
PANTHER:PTHR10438:SF278	SUPFAM:SSF52833	EnsemblPlantsGene:Solyc05g006850.2	EnsemblPlants:Solyc05g006850.2.1	TIGRFAMs:TIGR01068	InterPro:Thioredoxin
InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_CS	InterPro:Thioredoxin_domain	UniParc:UPI0002765895	:	:

Description

Thioredoxin [Source:UniProtKB/TrEMBL;Acc:K4BWL1]

Coordinates

chr5:-:1477194..1478448

Molecular Weight (calculated)

15432.8 Da

IEP (calculated)

8.307

GRAVY (calculated)

-0.233

Length

135 amino acids

Sequence
(BLAST)

001: MSGYNYPTWP EFNKKPITQQ IKRCQVITFN SSTKCMIHLN FLKDTNKLVV IDFTATWCGP CRNMDPIIND FAAKYTNVEF VKIDVDELVD VAEKYGVQAM
101: PTFVLMKKGE VVDQIVGADK DGLKMKIEKH KGSLY

Best Arabidopsis Sequence Match ( AT5G39950.1 )
(BLAST)

001: MGGALSTVFG SGEDATAAGT ESEPSRVLKF SSSARWQLHF NEIKESNKLL VVDFSASWCG PCRMIEPAIH AMADKFNDVD FVKLDVDELP DVAKEFNVTA
101: MPTFVLVKRG KEIERIIGAK KDELEKKVSK LRA

Arabidopsis Description

TRX2Thioredoxin H2 [Source:UniProtKB/Swiss-Prot;Acc:Q38879]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.