Factsheet for Solyc02g079960.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400055905	Potato	cytosol	96.0	96.0
VIT_00s0532g00030.t01	Wine grape	cytosol	64.8	64.29
AT1G11530.1	Thale cress	cytosol	59.2	62.71
KRH10686	Soybean	cytosol	60.0	60.48
VIT_19s0014g05090.t01	Wine grape	cytosol	60.8	60.32
Bra031769.1-P	Field mustard	cytosol	60.0	59.52
KRH22228	Soybean	cytosol	57.6	59.02
CDY34646	Canola	cytosol	59.2	58.73
KRH21649	Soybean	cytosol, plastid	58.4	58.4
GSMUA_Achr9P30140_001	Banana	cytosol	58.4	54.48
KRH27111	Soybean	nucleus	54.4	53.97
KRH55615	Soybean	cytosol	54.4	53.97
KRH25890	Soybean	nucleus	53.6	53.17
GSMUA_Achr5P26380_001	Banana	cytosol	52.0	50.39
KRH33304	Soybean	cytosol	49.6	49.21
Os04t0629500-01	Rice	cytosol	52.0	48.87
OQU82388	Sorghum	cytosol	50.4	48.84
Zm00001d026368_P001	Maize	cytosol, extracellular	48.8	47.29
TraesCS2A01G480300.1	Wheat	cytosol	44.8	40.29
TraesCS2D01G479600.1	Wheat	cytosol	44.8	40.29
HORVU2Hr1G107990.1	Barley	cytosol	44.0	39.86
TraesCS2B01G505100.1	Wheat	cytosol	44.0	39.57
Solyc02g084710.2.1	Tomato	extracellular	35.2	37.29
Solyc05g006830.2.1	Tomato	cytosol, plastid	36.0	33.33
Solyc05g006850.2.1	Tomato	cytosol	36.0	33.33
Solyc04g005810.2.1	Tomato	plastid	35.2	33.08
Solyc05g006870.2.1	Tomato	cytosol	34.4	31.85
Solyc04g080850.2.1	Tomato	extracellular	31.2	31.71
Solyc09g015820.2.1	Tomato	plastid	38.4	31.17
Solyc05g006860.2.1	Tomato	cytosol	33.6	31.11
Solyc03g095500.2.1	Tomato	cytosol	32.0	28.78
Solyc03g118560.1.1	Tomato	cytosol	26.4	27.05
Solyc02g087630.2.1	Tomato	plastid	33.6	24.85
Solyc05g056300.2.1	Tomato	plastid	25.6	17.58

Protein Annotations

MapMan:10.6.1	Gene3D:3.40.30.10	GO:GO:0003674	GO:GO:0003756	GO:GO:0003824	GO:GO:0004791
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006662
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0015035	GO:GO:0016671
GO:GO:0019725	GO:GO:0034599	GO:GO:0045454	GO:GO:0047134	GO:GO:0055114	GO:GO:0098869
InterPro:IPR013766	UniProt:K4B9L7	PFAM:PF00085	PIRSF:PIRSF000077	PFscan:PS51352	PANTHER:PTHR10438
PANTHER:PTHR10438:SF242	SUPFAM:SSF52833	EnsemblPlantsGene:Solyc02g079960.2	EnsemblPlants:Solyc02g079960.2.1	InterPro:Thioredoxin	InterPro:Thioredoxin-like_sf
InterPro:Thioredoxin_domain	UniParc:UPI0002768C21	:	:	:	:

Description

Thioredoxin [Source:UniProtKB/TrEMBL;Acc:K4B9L7]

Coordinates

chr2:+:44333446..44337341

Molecular Weight (calculated)

14017.0 Da

IEP (calculated)

5.658

GRAVY (calculated)

-0.150

Length

125 amino acids

Sequence
(BLAST)

001: MEVEEQGTKS RVVKVNSKES WDFHVNQATL QGCPIVAHFT AVWCIPSVAM KPFMEELAYM YQNMSFLTVD VDEVKEVASK YEVKAMPTFL LLKGGVPVDK
101: IVGANPDEMK KRIHSLAQSN PTDIP

Best Arabidopsis Sequence Match ( AT1G11530.1 )
(BLAST)

001: MARVVKIDSA ESWNFYVSQA KNQNCPIVAH FTALWCIPSV FMNSFFEELA FNYKDALFLI VDVDEVKEVA SQLEVKAMPT FLFLKDGNAM DKLVGANPDE
101: IKKRVDGFVQ SSRVVHIA

Arabidopsis Description

CXXS1Thioredoxin-like protein CXXS1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LDI5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.