CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
endoplasmic reticulum 1
nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH55615	Soybean	cytosol	91.27	91.27
KRH33304	Soybean	cytosol	84.92	84.92
KRH27111	Soybean	nucleus	70.63	70.63
KRH22228	Soybean	cytosol	66.67	68.85
VIT_19s0014g05090.t01	Wine grape	cytosol	62.7	62.7
GSMUA_Achr9P30140_001	Banana	cytosol	61.11	57.46
KRH10686	Soybean	cytosol	56.35	57.26
PGSC0003DMT400055905	Potato	cytosol	53.97	54.4
KRH21649	Soybean	cytosol, plastid	53.97	54.4
Solyc02g079960.2.1	Tomato	cytosol	53.17	53.6
AT1G11530.1	Thale cress	cytosol	48.41	51.69
GSMUA_Achr5P26380_001	Banana	cytosol	50.0	48.84
Bra031769.1-P	Field mustard	cytosol	47.62	47.62
CDY34646	Canola	cytosol	46.83	46.83
Os04t0629500-01	Rice	cytosol	46.83	44.36
OQU82388	Sorghum	cytosol	44.44	43.41
Zm00001d026368_P001	Maize	cytosol, extracellular	44.44	43.41
TraesCS2A01G480300.1	Wheat	cytosol	43.65	39.57
TraesCS2B01G505100.1	Wheat	cytosol	42.86	38.85
HORVU2Hr1G107990.1	Barley	cytosol	42.06	38.41
TraesCS2D01G479600.1	Wheat	cytosol	42.06	38.13
KRH15131	Soybean	cytosol, nucleus	33.33	35.29
KRH76717	Soybean	endoplasmic reticulum, nucleus	32.54	34.17
KRH05879	Soybean	endoplasmic reticulum	33.33	34.15
KRH28739	Soybean	cytosol	31.75	33.33
KRH51778	Soybean	endoplasmic reticulum	30.95	33.33
KRH61100	Soybean	cytosol	30.16	32.48
KRH74754	Soybean	cytosol	31.75	31.75
KRH09556	Soybean	cytosol	34.13	31.39
KRH74753	Soybean	cytosol	30.16	30.65
KRG99185	Soybean	cytosol, plastid	29.37	30.58
KRH00477	Soybean	cytosol	33.33	30.22
KRH69383	Soybean	cytosol	30.16	29.92
KRH45834	Soybean	cytosol, plastid	28.57	29.75
KRH69384	Soybean	cytosol	30.16	29.69
KRH40138	Soybean	cytosol, plastid	29.37	29.6
KRH01124	Soybean	endoplasmic reticulum	30.95	29.32
KRH01123	Soybean	cytosol	27.78	28.46
KRH40137	Soybean	endoplasmic reticulum	29.37	28.24
KRH64869	Soybean	cytosol	34.13	28.1
KRH01119	Soybean	cytosol	30.16	27.14
KRH40136	Soybean	endoplasmic reticulum	31.75	25.48
KRH74748	Soybean	plastid	26.98	24.64
KRH69387	Soybean	plastid	26.98	24.64
KRH40706	Soybean	mitochondrion	32.54	24.26
KRH00940	Soybean	nucleus, plastid	26.19	18.44
KRH40285	Soybean	plastid	25.4	17.68

Protein Annotations

MapMan:10.6.1	EntrezGene:100500083	Gene3D:3.40.30.10	EMBL:ACUP02007375	EMBL:BT090786	UniProt:C6T033
EnsemblPlantsGene:GLYMA_12G136400	GO:GO:0003674	GO:GO:0003824	GO:GO:0004791	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006662	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0015035	GO:GO:0016671	GO:GO:0019725	GO:GO:0034599	GO:GO:0045454
GO:GO:0047134	GO:GO:0055114	GO:GO:0098869	InterPro:IPR013766	EnsemblPlants:KRH25890	ProteinID:KRH25890
ProteinID:KRH25890.1	PFAM:PF00085	PFscan:PS51352	PANTHER:PTHR10438	PANTHER:PTHR10438:SF364	SUPFAM:SSF52833
InterPro:Thioredoxin	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	UniParc:UPI0001B152D1	:	:

Description

hypothetical protein

Coordinates

chr12:-:16044687..16046629

Molecular Weight (calculated)

14348.4 Da

IEP (calculated)

9.792

GRAVY (calculated)

-0.334

Length

126 amino acids

Sequence
(BLAST)

001: MKGQQQLKKS KVVKIDSRKS WEHHITNATN KGYPVMVHFS AYWCMPSITM NPFFEELAST YQSVLFLNVD VDEVKEVASK LEIKAIPTFL LMNRGALVDK
101: TVGANPDELR KRINCSIHQT HSPKSV

Best Arabidopsis Sequence Match ( AT1G11530.1 )
(BLAST)

001: MARVVKIDSA ESWNFYVSQA KNQNCPIVAH FTALWCIPSV FMNSFFEELA FNYKDALFLI VDVDEVKEVA SQLEVKAMPT FLFLKDGNAM DKLVGANPDE
101: IKKRVDGFVQ SSRVVHIA

Arabidopsis Description

CXXS1Thioredoxin-like protein CXXS1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LDI5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.