CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 5
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH01123	Soybean	cytosol	65.65	69.92
KRH40138	Soybean	cytosol, plastid	66.41	69.6
KRH01124	Soybean	endoplasmic reticulum	61.83	60.9
CDY65333	Canola	cytosol	59.54	58.65
Bra028445.1-P	Field mustard	cytosol	58.02	57.14
CDX67442	Canola	cytosol	58.02	56.72
VIT_14s0066g02560.t01	Wine grape	cytosol	58.78	56.62
AT5G39950.1	Thale cress	cytosol	56.49	55.64
TraesCS5D01G454800.1	Wheat	cytosol	54.96	54.96
TraesCS5B01G452700.1	Wheat	cytosol, golgi, unclear	54.96	54.96
HORVU5Hr1G107210.1	Barley	cytosol	54.96	54.96
KRH74753	Soybean	cytosol	51.91	54.84
KRH40136	Soybean	endoplasmic reticulum	65.65	54.78
KRH74754	Soybean	cytosol	52.67	54.76
TraesCS5A01G448200.1	Wheat	cytosol	54.2	54.2
KRH69384	Soybean	cytosol	52.67	53.91
KRH69383	Soybean	cytosol	51.91	53.54
Bra040318.1-P	Field mustard	cytosol	52.67	53.08
KRG99185	Soybean	cytosol, plastid	48.85	52.89
KRH45834	Soybean	cytosol, plastid	48.85	52.89
PGSC0003DMT400003564	Potato	plastid	57.25	52.82
KRH76717	Soybean	endoplasmic reticulum, nucleus	48.09	52.5
KRH51778	Soybean	endoplasmic reticulum	46.56	52.14
Zm00001d034491_P001	Maize	plastid	52.67	51.88
GSMUA_Achr2P17710_001	Banana	cytosol	49.62	51.18
EER90722	Sorghum	cytosol	51.91	51.13
GSMUA_Achr9P10960_001	Banana	mitochondrion, plastid	48.09	50.81
KRH61100	Soybean	cytosol	45.04	50.43
Os03t0800700-01	Rice	plastid	51.15	50.0
HORVU5Hr1G107170.1	Barley	cytosol	54.96	49.66
KRH01119	Soybean	cytosol	51.91	48.57
GSMUA_Achr7P16980_001	Banana	cytosol	37.4	47.57
KRH28739	Soybean	cytosol	43.51	47.5
KRH15131	Soybean	cytosol, nucleus	42.75	47.06
KRH05879	Soybean	endoplasmic reticulum	43.51	46.34
Os07t0190800-01	Rice	cytosol	47.33	44.93
CDY57101	Canola	cytosol	52.67	41.82
KRH69387	Soybean	plastid	43.51	41.3
KRH74748	Soybean	plastid	42.75	40.58
Solyc02g087630.2.1	Tomato	plastid	51.91	40.24
CDY37032	Canola	cytosol	52.67	36.9
KRH10686	Soybean	cytosol	33.59	35.48
GSMUA_Achr7P12220_001	Banana	cytosol	31.3	35.34
KRH09556	Soybean	cytosol	35.11	33.58
KRH00477	Soybean	cytosol	35.11	33.09
KRH21649	Soybean	cytosol, plastid	31.3	32.8
HORVU6Hr1G018190.1	Barley	mitochondrion	22.14	31.18
KRH64869	Soybean	cytosol	35.11	30.07
KRH22228	Soybean	cytosol	27.48	29.51
KRH33304	Soybean	cytosol	28.24	29.37
KRH25890	Soybean	nucleus	28.24	29.37
KRH55615	Soybean	cytosol	27.48	28.57
KRH27111	Soybean	nucleus	27.48	28.57
KRH40706	Soybean	mitochondrion	33.59	26.04
KRH40285	Soybean	plastid	28.24	20.44
KRH00940	Soybean	nucleus, plastid	27.48	20.11

Protein Annotations

MapMan:10.6.1	EntrezGene:100803391	MapMan:18.7.2	Gene3D:3.40.30.10	EMBL:ACUP02006021	EnsemblPlantsGene:GLYMA_09G240900
GO:GO:0003674	GO:GO:0003824	GO:GO:0004791	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006662	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0015035	GO:GO:0016671	GO:GO:0019725	GO:GO:0034599	GO:GO:0045454	GO:GO:0047134
GO:GO:0055114	GO:GO:0098869	UniProt:I1L605	InterPro:IPR013766	EnsemblPlants:KRH40137	ProteinID:KRH40137
ProteinID:KRH40137.1	PFAM:PF00085	PIRSF:PIRSF000077	PRINTS:PR00421	ScanProsite:PS00194	PFscan:PS51352
PANTHER:PTHR10438	PANTHER:PTHR10438:SF278	SUPFAM:SSF52833	TIGRFAMs:TIGR01068	InterPro:Thioredoxin	InterPro:Thioredoxin-like_sf
InterPro:Thioredoxin_CS	InterPro:Thioredoxin_domain	UniParc:UPI0002338614	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:46322095..46322936

Molecular Weight (calculated)

14770.7 Da

IEP (calculated)

7.510

GRAVY (calculated)

-0.254

Length

131 amino acids

Sequence
(BLAST)

001: MGSAFSALFG RGSTVAEGSS ESLHVLPFHS SERWQLHFNE VKETSKLVVI DFTASWCGPC RFIAPVFNEM AKKFSNAEFV KIDVDELPDV AKDFKVEAMP
101: TFVLCKKGKE VDRVVGARKD ELQNKIQKHY Q

Best Arabidopsis Sequence Match ( AT5G39950.1 )
(BLAST)

001: MGGALSTVFG SGEDATAAGT ESEPSRVLKF SSSARWQLHF NEIKESNKLL VVDFSASWCG PCRMIEPAIH AMADKFNDVD FVKLDVDELP DVAKEFNVTA
101: MPTFVLVKRG KEIERIIGAK KDELEKKVSK LRA

Arabidopsis Description

TRX2Thioredoxin H2 [Source:UniProtKB/Swiss-Prot;Acc:Q38879]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.