Factsheet for VIT_18s0001g13240.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0455g00010.t01
VIT_00s0555g00010.t01
VIT_00s0555g00020.t01
VIT_00s1372g00020.t01
VIT_02s0033g01400.t01
VIT_03s0017g00210.t01
VIT_04s0023g01650.t01
VIT_04s0044g00580.t01
VIT_04s0079g00610.t01
VIT_05s0077g01070.t01
VIT_05s0094g01170.t01
VIT_05s0094g01180.t01
VIT_06s0004g00470.t01
VIT_06s0004g07730.t01
VIT_08s0007g01430.t01
VIT_08s0007g01630.t01
VIT_09s0002g00610.t01
VIT_09s0054g00890.t01
VIT_10s0003g05320.t01
VIT_11s0016g03630.t01
VIT_12s0035g01140.t01
VIT_13s0067g00900.t01
VIT_14s0219g00150.t01
VIT_15s0021g01410.t01
VIT_16s0013g00520.t01
VIT_16s0022g00680.t01
VIT_16s0050g00600.t01
VIT_16s0115g00130.t01
VIT_17s0000g10430.t01
VIT_18s0001g15090.t01
VIT_18s0122g01080.t01
VIT_19s0027g01340.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G51030.1	VIT_00s1372g00020.t01	AT1G02130.1	23615222
AT3G51030.1	VIT_15s0021g01410.t01	AT1G02130.1	23615222
AT3G51030.1	VIT_16s0013g00520.t01	AT1G02130.1	23615222
AT3G51030.1	VIT_06s0004g07730.t01	AT1G06950.1	23615222
AT3G51030.1	VIT_12s0035g01140.t01	AT1G09630.1	23615222
AT3G51030.1	VIT_18s0122g01080.t01	AT1G20760.1	23615222
AT3G51030.1	VIT_18s0001g15090.t01	AT1G43890.1	23615222
AT3G51030.1	VIT_04s0044g00580.t01	AT1G49240.1	23615222
AT3G51030.1	VIT_11s0016g03630.t01	AT1G65980.1	23615222
AT3G51030.1	VIT_09s0002g00610.t01	AT1G72370.1	23615222
AT3G51030.1	VIT_09s0054g00890.t01	AT1G78900.1	23615222
AT3G51030.1	VIT_04s0079g00610.t01	AT3G03270.1	23615222
AT3G51030.1	VIT_17s0000g10430.t01	AT3G04120.1	23615222
AT3G51030.1	VIT_13s0067g00900.t01	AT3G08510.1	23615222
AT3G51030.1	VIT_03s0017g00210.t01	AT3G08530.1	23615222
AT3G51030.1	VIT_16s0115g00130.t01	AT3G08530.1	23615222
AT3G51030.1	VIT_19s0027g01340.t01	AT3G08530.1	23615222
AT3G51030.1	VIT_03s0017g00210.t01	AT3G11130.1	23615222
AT3G51030.1	VIT_16s0115g00130.t01	AT3G11130.1	23615222
AT3G51030.1	VIT_19s0027g01340.t01	AT3G11130.1	23615222
AT3G51030.1	VIT_05s0077g01070.t01	AT3G17020.1	23615222
AT3G51030.1	VIT_02s0033g01400.t01	AT3G22370.1	23615222
AT3G51030.1	VIT_14s0219g00150.t01	AT3G27380.1	23615222
AT3G51030.1	VIT_08s0007g01430.t01	AT3G53990.1	23615222
AT3G51030.1	VIT_00s0455g00010.t01	AT4G17170.1	23615222
AT3G51030.1	VIT_00s0555g00010.t01	AT4G22710.1	23615222
AT3G51030.1	VIT_00s0555g00020.t01	AT4G22710.1	23615222
AT3G51030.1	VIT_05s0094g01170.t01	AT4G22710.1	23615222
AT3G51030.1	VIT_05s0094g01180.t01	AT4G22710.1	23615222
AT3G51030.1	VIT_04s0044g00580.t01	AT5G09810.1	23615222
AT3G51030.1	VIT_06s0004g00470.t01	AT5G19760.1	23615222
AT3G51030.1	VIT_16s0050g00600.t01	AT5G23890.1	23615222
AT3G51030.1	VIT_10s0003g05320.t01	AT5G44340.1	23615222
AT3G51030.1	VIT_16s0022g00680.t01	AT5G51480.1	23615222
AT3G51030.1	VIT_08s0007g01630.t01	AT5G62700.1	23615222
AT3G51030.1	VIT_04s0023g01650.t01	AT5G66760.1	23615222

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0001g13250.t01	Wine grape	cytosol	56.96	78.95
Bra036839.1-P	Field mustard	cytosol	41.14	57.02
CDX77974	Canola	cytosol	41.14	57.02
CDY28996	Canola	cytosol	41.14	57.02
AT3G51030.1	Thale cress	cytosol	41.14	57.02
Bra012872.1-P	Field mustard	cytosol	40.51	56.14
CDX90669	Canola	cytosol	40.51	56.14
KRH76717	Soybean	endoplasmic reticulum, nucleus	42.41	55.83
VIT_04s0023g02700.t01	Wine grape	cytosol	39.87	54.78
GSMUA_Achr4P22400_001	Banana	cytosol, unclear	38.61	53.51
TraesCS1B01G339000.1	Wheat	cytosol	39.87	53.39
KRH28739	Soybean	cytosol	40.51	53.33
TraesCS1D01G327500.1	Wheat	cytosol, plastid	39.24	52.1
HORVU1Hr1G075560.1	Barley	cytosol	39.87	51.64
TraesCS1A01G325600.1	Wheat	cytosol	39.87	48.46
GSMUA_Achr2P17610_001	Banana	cytosol	34.81	48.25
TraesCS1B01G338800.1	Wheat	cytosol, golgi, plastid, unclear	38.61	48.03
OQU78269	Sorghum	cytosol	37.34	46.83
Zm00001d038652_P003	Maize	cytosol	36.71	45.31
TraesCS7D01G001000.1	Wheat	cytosol	32.28	45.13
TraesCS7A01G562100.1	Wheat	cytosol	29.75	44.34
CDY34470	Canola	cytosol	15.82	43.1
VIT_01s0026g01460.t01	Wine grape	cytosol	32.91	42.98
VIT_19s0014g05090.t01	Wine grape	cytosol	29.11	36.51
VIT_00s0532g00030.t01	Wine grape	cytosol	28.48	35.71
VIT_14s0066g02560.t01	Wine grape	cytosol	30.38	35.29
VIT_08s0040g00020.t01	Wine grape	cytosol	27.22	30.94
CDX73752	Canola	cytosol, mitochondrion	40.51	29.09
VIT_04s0023g00740.t01	Wine grape	plastid	25.32	23.26

Protein Annotations

MapMan:10.6.1	MapMan:18.7.2	Gene3D:3.40.30.10	ProteinID:CCB45986	ProteinID:CCB45986.1	UniProt:F6H1K5
EMBL:FN595227	GO:GO:0003674	GO:GO:0003824	GO:GO:0004791	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006662	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0015035	GO:GO:0016671	GO:GO:0019725	GO:GO:0034599	GO:GO:0045454
GO:GO:0047134	GO:GO:0055114	GO:GO:0098869	InterPro:IPR013766	PFAM:PF00085	PRINTS:PR00421
ScanProsite:PS00194	PFscan:PS51352	PANTHER:PTHR10438	PANTHER:PTHR10438:SF361	SUPFAM:SSF52833	InterPro:Thioredoxin
InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_CS	InterPro:Thioredoxin_domain	UniParc:UPI000210953C	ArrayExpress:VIT_18s0001g13240	EnsemblPlantsGene:VIT_18s0001g13240
EnsemblPlants:VIT_18s0001g13240.t01	RefSeq:XP_002280947	RefSeq:XP_002280947.1	:	:	:

Description

No Description!

Coordinates

chr18:-:11293740..11296751

Molecular Weight (calculated)

18154.7 Da

IEP (calculated)

5.319

GRAVY (calculated)

-0.344

Length

158 amino acids

Sequence
(BLAST)

001: MQKNLSRAGP TQYFGAKDDC KIEWVRTNID WITYHQILQF NIANNEEHSR QNLIFLYPRE IPTAENIGNN ENKVVVDFTA SWCGPCRVIS PFLAELAKKM
101: PNVIFLKVDV DELETVAKEW EVEAMPTFLF LKEGNVVDKV VGAKREELVQ KTEKHATA

Best Arabidopsis Sequence Match ( AT3G51030.1 )
(BLAST)

001: MASEEGQVIA CHTVETWNEQ LQKANESKTL VVVDFTASWC GPCRFIAPFF ADLAKKLPNV LFLKVDTDEL KSVASDWAIQ AMPTFMFLKE GKILDKVVGA
101: KKDELQSTIA KHLA

Arabidopsis Description

TRX1Thioredoxin H1 [Source:UniProtKB/Swiss-Prot;Acc:P29448]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.